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CNL05190 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3, putative [ Cryptococcus neoformans var. neoformans JEC21 ]

Gene ID: 3254749, updated on 23-Oct-2023

Summary

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Gene symbol
CNL05190
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3, putative
Locus tag
CNL05190
Gene type
protein coding
RNA name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3, putative
RefSeq status
PROVISIONAL
Organism
Cryptococcus neoformans var. neoformans JEC21 (strain: JEC21, serotype: D)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex
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Genomic context

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Location:
chromosome: 12
Exon count:
14
Sequence:
Chromosome: 12; NC_006681.1 (452062..455688)

Chromosome 12 - NC_006681.1Genomic Context describing neighboring genes Neighboring gene Eukaryotic translation initiation factor 3 subunit 6, putative Neighboring gene conserved hypothetical protein Neighboring gene hypothetical protein Neighboring gene WD-repeat protein, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006681.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans. Loftus BJ, et al. Science, 2005 Feb 25. PMID 15653466, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3, putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006681.1 Reference assembly

    Range
    452062..455688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_568059.2 → XP_568059.1  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3, putative [Cryptococcus neoformans var. neoformans JEC21]

    See identical proteins and their annotated locations for XP_568059.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A225ZAU0, Q5K8L9
    Conserved Domains (5) summary
    cd00046
    Location:306 → 468
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:718 → 847
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00176
    Location:305 → 595
    SNF2_N; SNF2 family N-terminal domain
    pfam08797
    Location:47 → 143
    HIRAN; HIRAN domain
    pfam13639
    Location:648 → 690
    zf-RING_2; Ring finger domain
Nucleotide Protein
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