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olig2 oligodendrocyte lineage transcription factor 2 [ Danio rerio (zebrafish) ]

Gene ID: 325288, updated on 18-Jul-2021

Summary

Official Symbol
olig2provided by ZNC
Official Full Name
oligodendrocyte lineage transcription factor 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4013
See related
Ensembl:ENSDARG00000040946
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fc64g09
Orthologs
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Genomic context

See olig2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (32751435..32753515, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (32940689..32942769, complement)
103 previous assembly Zv9 (GCF_000002035.4) 9 NC_007120.5 (33784743..33786823, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene oligodendrocyte transcription factor 1 Neighboring gene si:ch211-165b19.11 Neighboring gene glutamine amidotransferase class 1 domain containing 3 Neighboring gene myxovirus (influenza virus) resistance C

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within abducens nucleus development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within dopaminergic neuron differentiation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within dopaminergic neuron differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within facial nucleus development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within glial cell fate determination IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within myelination IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within neuroblast fate determination IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within neuron development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in neuron differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within neuron differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within neuron migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within oligodendrocyte cell fate specification IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within oligodendrocyte development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within oligodendrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within oligodendrocyte differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of neurogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within spinal cord motor neuron cell fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within spinal cord motor neuron differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within ventral spinal cord interneuron differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
oligodendrocyte transcription factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178100.1NP_835201.1  oligodendrocyte transcription factor 2

    See identical proteins and their annotated locations for NP_835201.1

    Status: PROVISIONAL

    Source sequence(s)
    AF442964
    UniProtKB/TrEMBL
    Q8QGI4
    Related
    ENSDARP00000060005.4, ENSDART00000060006.5
    Conserved Domains (1) summary
    smart00353
    Location:88142
    HLH; helix loop helix domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    32751435..32753515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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