Format

Send to:

Choose Destination

sog short gastrulation [ Drosophila melanogaster (fruit fly) ]

Gene ID: 32498, updated on 26-Aug-2021

Summary

Official Symbol
sogprovided by FlyBase
Official Full Name
short gastrulationprovided by FlyBase
Primary source
FLYBASE:FBgn0003463
Locus tag
Dmel_CG9224
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG9224; Dm sog; Dmel\CG9224; l(1)G0160; l(1)G0395; l(1)G0479; Sog; SOG
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See sog in Genome Data Viewer
Location:
13E1-13E3; 1-51 cM
Exon count:
7
Annotation release Status Assembly Chr Location
Release 6.32 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (15603283..15633434, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (15497316..15527467, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Alkaline phosphatase 11 Neighboring gene long non-coding RNA:CR44423 Neighboring gene long non-coding RNA:CR44893

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables BMP binding IDA
Inferred from Direct Assay
more info
PubMed 
enables BMP binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables collagen binding IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
short gastrulation
Names
CG9224-PA
CG9224-PB
CG9224-PE
chordin
short of gastrulation
short-gastrulation
sog-PA
sog-PB
sog-PE

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    15603283..15633434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001272649.2NP_001259578.1  short gastrulation, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259578.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q24025
    UniProtKB/TrEMBL
    M9PH73
    Related
    FBpp0309304, FBtr0340346
    Conserved Domains (2) summary
    smart00754
    Location:594708
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    pfam00093
    Location:744803
    VWC; von Willebrand factor type C domain
  2. NM_001272647.2NP_001259576.1  short gastrulation, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259576.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q24025
    UniProtKB/TrEMBL
    M9PH73
    Related
    FBpp0304148, FBtr0331760
    Conserved Domains (2) summary
    smart00754
    Location:594708
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    pfam00093
    Location:744803
    VWC; von Willebrand factor type C domain
  3. NM_057388.4NP_476736.1  short gastrulation, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_476736.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q24025
    UniProtKB/TrEMBL
    M9PH73
    Related
    FBpp0073879, FBtr0074063
    Conserved Domains (2) summary
    smart00754
    Location:594708
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    pfam00093
    Location:744803
    VWC; von Willebrand factor type C domain
Support Center