syncripl synaptotagmin binding, cytoplasmic RNA interacting protein, like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: syncriplprovided by ZNC
Official Full Name: synaptotagmin binding, cytoplasmic RNA interacting protein, likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-3104
See related: Ensembl:ENSDARG00000026723 AllianceGenome:ZFIN:ZDB-GENE-030131-3104
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: SYNCRIP; zgc:55901; wu:fc27c07
Summary: Predicted to enable mRNA 5'-UTR binding activity. Predicted to be involved in CRD-mediated mRNA stabilization. Predicted to be part of CRD-mediated mRNA stability complex and ribonucleoprotein complex. Predicted to be active in nucleus. Orthologous to human SYNCRIP (synaptotagmin binding cytoplasmic RNA interacting protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 17

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (50261574..50285502)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (50182510..50206614)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc27c07.x1 (e-PCR)
- UniSTS:187877

fj46e02.y1 (e-PCR)
- UniSTS:199402

fk39b03.y1 (e-PCR)
- UniSTS:200959

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA 5'-UTR binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in CRD-mediated mRNA stabilization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of CRD-mediated mRNA stability complex	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: synaptotagmin binding, cytoplasmic RNA interacting protein, like

Names: NS1-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199679.1 → NP_955973.1 synaptotagmin binding, cytoplasmic RNA interacting protein, like

See identical proteins and their annotated locations for NP_955973.1

Status: PROVISIONAL

Source sequence(s)

BC046902

UniProtKB/TrEMBL

Q802X5

Related

ENSDARP00000127882.1, ENSDART00000154503.3

Conserved Domains (3) summary

cd12483
Location:162 → 240

RRM1_hnRNPQ; RNA recognition motif 1 in vertebrate heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)

cd12494
Location:338 → 409

RRM3_hnRNPR; RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein R (hnRNP R)

cl17169
Location:242 → 326

RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007128.7 Reference GRCz11 Primary Assembly

Range

50261574..50285502

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009293300.3 → XP_009291575.1 synaptotagmin binding, cytoplasmic RNA interacting protein, like isoform X1

UniProtKB/TrEMBL

A0A8M3ARN6

Conserved Domains (3) summary

cd12483
Location:162 → 240

RRM1_hnRNPQ; RNA recognition motif 1 in vertebrate heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)

cd12494
Location:338 → 409

RRM3_hnRNPR; RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein R (hnRNP R)

cl17169
Location:242 → 326

RRM_SF; RNA recognition motif (RRM) superfamily
XM_005158913.4 → XP_005158970.1 synaptotagmin binding, cytoplasmic RNA interacting protein, like isoform X2

UniProtKB/TrEMBL

A0A8M2B5D1

Conserved Domains (2) summary

cd12494
Location:239 → 310

RRM3_hnRNPR; RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein R (hnRNP R)

cl17169
Location:143 → 227

RRM_SF; RNA recognition motif (RRM) superfamily