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cstf1 cleavage stimulation factor, 3' pre-RNA, subunit 1 [ Danio rerio (zebrafish) ]

Gene ID: 324238, updated on 13-Jun-2020

Summary

Official Symbol
cstf1provided by ZNC
Official Full Name
cleavage stimulation factor, 3' pre-RNA, subunit 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2958
See related
Ensembl:ENSDARG00000044820
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc22d10; zgc:66207; zgc:77560; wu:fc22d10; wu:fd16h09
Orthologs

Genomic context

See cstf1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (27817301..27827533, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (27570127..27580359, complement)
103 previous assembly Zv9 (GCF_000002035.4) 11 NC_007122.5 (28694141..28704391, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108191614 Neighboring gene Cas scaffold protein family member 4 Neighboring gene eukaryotic translation initiation factor 4 gamma, 3a Neighboring gene endothelin converting enzyme 1

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
mRNA cleavage stimulating factor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
cleavage stimulation factor subunit 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328559.1NP_001315488.1  cleavage stimulation factor subunit 1

    Status: VALIDATED

    Source sequence(s)
    BX601648, EH556892, EH592404
    UniProtKB/TrEMBL
    F1QFK9
    Related
    ENSDARP00000111131.1, ENSDART00000130800.4
    Conserved Domains (4) summary
    COG2319
    Location:104428
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:100424
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam16699
    Location:662
    CSTF1_dimer; Cleavage stimulation factor subunit 1, dimerization domain
    sd00039
    Location:116171
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    27817301..27827533 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_212670.1: Suppressed sequence

    Description
    NM_212670.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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