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snrpa small nuclear ribonucleoprotein polypeptide A [ Danio rerio (zebrafish) ]

Gene ID: 324121, updated on 17-Nov-2020

Summary

Official Symbol
snrpaprovided by ZNC
Official Full Name
small nuclear ribonucleoprotein polypeptide Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2841
See related
Ensembl:ENSDARG00000018890
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc19d01; zgc:77810; wu:fc19d01
Orthologs

Genomic context

See snrpa in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (35403042..35407695, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (35428196..35432849, complement)
103 previous assembly Zv9 (GCF_000002035.4) 18 NC_007129.5 (33747012..33752007, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene transforming growth factor beta regulator 1 Neighboring gene protein jagged-1b-like Neighboring gene zgc:153119 Neighboring gene inositol-trisphosphate 3-kinase Cb

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
U1 snRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
U1 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
U1 small nuclear ribonucleoprotein A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199671.1NP_955965.1  U1 small nuclear ribonucleoprotein A

    See identical proteins and their annotated locations for NP_955965.1

    Status: PROVISIONAL

    Source sequence(s)
    BC064308
    UniProtKB/TrEMBL
    Q6P2T1
    Related
    ENSDARP00000153873.1, ENSDART00000191845.1
    Conserved Domains (3) summary
    COG0724
    Location:998
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12477
    Location:795
    RRM1_U1A; RNA recognition motif 1 found in vertebrate U1 small nuclear ribonucleoprotein A (U1A)
    cd12480
    Location:202281
    RRM2_U1A; RNA recognition motif 2 found in vertebrate U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    35403042..35407695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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