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tia1l cytotoxic granule-associated RNA binding protein 1, like [ Danio rerio (zebrafish) ]

Gene ID: 323447, updated on 1-Aug-2018

Summary

Official Symbol
tia1lprovided by ZNC
Official Full Name
cytotoxic granule-associated RNA binding protein 1, likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2167
See related
Ensembl:ENSDARG00000026476 Vega:OTTDARG00000016186
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
TIA1; fb98f09; zgc:55893; zgc:76917; wu:fb98f09

Genomic context

See tia1l in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (24510619..24517757, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (24006819..24013963, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911067 Neighboring gene uncharacterized LOC110438646 Neighboring gene microRNA 1306 Neighboring gene DGCR8 microprocessor complex subunit Neighboring gene tRNA methyltransferase 2 homolog A

Genomic regions, transcripts, and products

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Clone Names

  • MGC55893

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
TIA1 cytotoxic granule-associated RNA binding protein 1
Names
TIA1 cytotoxic granule-associated RNA binding protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200182.2NP_956476.1  TIA1 cytotoxic granule-associated RNA binding protein 1

    See identical proteins and their annotated locations for NP_956476.1

    Status: PROVISIONAL

    Source sequence(s)
    BC066734
    UniProtKB/TrEMBL
    Q7ZVM6
    Related
    ENSDARP00000018009.6, OTTDARP00000016420, ENSDART00000003957.7, OTTDART00000019410
    Conserved Domains (4) summary
    cd12618
    Location:96175
    RRM2_TIA1; RNA recognition motif 2 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cd12620
    Location:206278
    RRM3_TIAR; RNA recognition motif 3 in nucleolysin TIAR and similar proteins
    TIGR01661
    Location:7272
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:1090
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    24510619..24517757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005165110.4XP_005165167.1  TIA1 cytotoxic granule-associated RNA binding protein 1 isoform X1

    Conserved Domains (4) summary
    cd12618
    Location:96175
    RRM2_TIA1; RNA recognition motif 2 in nucleolysin TIA-1 isoform p40 (p40-TIA-1) and similar proteins
    cd12620
    Location:206278
    RRM3_TIAR; RNA recognition motif 3 in nucleolysin TIAR and similar proteins
    TIGR01661
    Location:7272
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:1090
    RRM_SF; RNA recognition motif (RRM) superfamily

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394576.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    206717..213788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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