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pol DNA polymerase [ Thermococcus kodakarensis KOD1 ]

Gene ID: 3233723, updated on 27-Nov-2025
Gene symbol
pol
Gene description
DNA polymerase
Locus tag
TK_RS00010
Gene type
protein coding
Organism
Thermococcus kodakarensis KOD1 (strain: KOD1, type-material: type strain of Thermococcus kodakarensis)
Lineage
Archaea; Methanobacteriati; Methanobacteriota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus
Old locus tag
TK0001
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Sequence:
NC_006624.1 (1..5016)

NC_006624.1Genomic Context describing neighboring genes Neighboring gene DUF3368 domain-containing protein Neighboring gene M48 family metallopeptidase Neighboring gene NfeD family protein Neighboring gene YdbT family protein

Genomic Sequence:
NC_006624.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Crystal structure of DNA polymerase from hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1. Hashimoto H, et al. J Mol Biol, 2001 Feb 23. PMID 11178906
  2. Characterization of two intein homing endonucleases encoded in the DNA polymerase gene of Pyrococcus kodakaraensis strain KOD1. Nishioka M, et al. Nucleic Acids Res, 1998 Oct 1. PMID 9742242, Free PMC Article
  3. Characterization of DNA polymerase from Pyrococcus sp. strain KOD1 and its application to PCR. Takagi M, et al. Appl Environ Microbiol, 1997 Nov. PMID 9361436, Free PMC Article
  4. Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Fukui T, et al. Genome Res, 2005 Mar. PMID 15710748, Free PMC Article
  5. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Roberts RJ, et al. Nucleic Acids Res, 2003 Apr 1. PMID 12654995, Free PMC Article

GeneRIFs: Gene References Into Functions

Preferred Names
DNA polymerase
WP_011248956.1

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006624.1 Reference assembly

    Range
    1..5016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_011248956.1 DNA polymerase

    See identical proteins and their annotated locations for WP_011248956.1

    UniProtKB/Swiss-Prot
    P77933, Q5JEA7
    Conserved Domains (10) summary
    cd05780
    Location:133 → 326
    DNA_polB_Kod1_like_exo; DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases
    smart00305
    Location:726 → 772
    HintC; Hint (Hedgehog/Intein) domain C-terminal region
    smart00306
    Location:887 → 975
    HintN; Hint (Hedgehog/Intein) domain N-terminal region
    COG0417
    Location:766 → 855
    PolB; DNA polymerase elongation subunit (family B) [Replication, recombination and repair]
    COG1372
    Location:408 → 766
    Hop; Intein/homing endonuclease [Replication, recombination and repair, Mobilome: prophages, transposons]
    cd00081
    Location:1344 → 1388
    Hint; Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, ...
    cl10023
    Location:1401 → 1653
    POLBc; DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic ...
    pfam03104
    Location:20 → 278
    DNA_pol_B_exo1; DNA polymerase family B, exonuclease domain
    pfam14528
    Location:624 → 702
    LAGLIDADG_3; LAGLIDADG-like domain
    pfam14890
    Location:857 → 1388
    Intein_splicing; Intein splicing domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P77933.3