U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HOXC11 homeobox C11 [ Homo sapiens (human) ]

Gene ID: 3227, updated on 5-Aug-2022

Summary

Official Symbol
HOXC11provided by HGNC
Official Full Name
homeobox C11provided by HGNC
Primary source
HGNC:HGNC:5123
See related
Ensembl:ENSG00000123388 MIM:605559; AllianceGenome:HGNC:5123
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HOX3H
Summary
This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, which are located on different chromosomes and consist of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXC genes located in a cluster on chromosome 12. The product of this gene binds to a promoter element of the lactase-phlorizin hydrolase. It also may play a role in early intestinal development. An alternatively spliced variant encoding a shorter isoform has been described but its full-length nature has not been determined. [provided by RefSeq, Jul 2008]
Expression
Low expression observed in reference dataset See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See HOXC11 in Genome Data Viewer
Location:
12q13.13
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (53973126..53977643)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (53938618..53943153)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (54366910..54371427)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene HOXC13 antisense RNA Neighboring gene homeobox C13 Neighboring gene uncharacterized LOC105369775 Neighboring gene homeobox C12 Neighboring gene HOX transcript antisense RNA Neighboring gene NUP98-HOXC11 recombination region Neighboring gene HOXC11-HOXC10 intergenic CAGE-defined high expression enhancer Neighboring gene HOXC cluster antisense RNA 3 Neighboring gene homeobox C10

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC4906

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in anatomical structure development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 
involved_in embryonic digit morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in embryonic skeletal joint morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in endoderm development TAS
Traceable Author Statement
more info
PubMed 
involved_in metanephros development IEA
Inferred from Electronic Annotation
more info
 
involved_in organ induction IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
involved_in proximal/distal pattern formation IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in chromatin ISA
Inferred from Sequence Alignment
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
homeobox protein Hox-C11
Names
homeo box C11
homeobox protein Hox-3H

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_014212.4NP_055027.1  homeobox protein Hox-C11

    See identical proteins and their annotated locations for NP_055027.1

    Status: REVIEWED

    Source sequence(s)
    AC012531, AJ000041, BC001543
    Consensus CDS
    CCDS8867.1
    UniProtKB/Swiss-Prot
    O43248, Q96DH2
    Related
    ENSP00000446680.1, ENST00000546378.1
    Conserved Domains (2) summary
    pfam00046
    Location:235288
    Homeobox; Homeobox domain
    pfam12045
    Location:42178
    DUF3528; Protein of unknown function (DUF3528)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    53973126..53977643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    53938618..53943153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)