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rad21a RAD21 cohesin complex component a [ Danio rerio (zebrafish) ]

Gene ID: 322275, updated on 12-Aug-2018

Summary

Official Symbol
rad21aprovided by ZNC
Official Full Name
RAD21 cohesin complex component aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-994
See related
Ensembl:ENSDARG00000006092 Vega:OTTDARG00000042889
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
rad21; wu:fb55d02; wu:fb93f04

Genomic context

See rad21a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (48409066..48430245, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (48467048..48488227, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene si:ch211-236p22.1 Neighboring gene eukaryotic translation initiation factor 3, subunit H, a Neighboring gene exostosin glycosyltransferase 1a Neighboring gene uncharacterized LOC558761

Genomic regions, transcripts, and products

Bibliography

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
atrioventricular valve morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
blood circulation IMP
Inferred from Mutant Phenotype
more info
PubMed 
double-strand break repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
embryonic viscerocranium morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
enteric nervous system development IGI
Inferred from Genetic Interaction
more info
PubMed 
enteric nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
heart looping IMP
Inferred from Mutant Phenotype
more info
PubMed 
meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitotic sister chromatid cohesion IMP
Inferred from Mutant Phenotype
more info
PubMed 
pharyngeal system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
rRNA transcription IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
sister chromatid cohesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
translation IMP
Inferred from Mutant Phenotype
more info
PubMed 
ventriculo bulbo valve morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
meiotic cohesin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
RAD21 cohesin complex component a
Names
RAD21 homolog a
double-strand-break repair protein rad21 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199595.1NP_955889.1  RAD21 cohesin complex component a

    Status: PROVISIONAL

    Source sequence(s)
    BC045311
    UniProtKB/TrEMBL
    Q7ZW30
    Related
    ENSDARP00000009867.6, OTTDARP00000048481, ENSDART00000005927.8, OTTDART00000061990
    Conserved Domains (2) summary
    pfam04824
    Location:586640
    Rad21_Rec8; Conserved region of Rad21 / Rec8 like protein
    pfam04825
    Location:1104
    Rad21_Rec8_N; N terminus of Rad21 / Rec8 like protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    48409066..48430245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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