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cct5 chaperonin containing TCP1, subunit 5 (epsilon) [ Danio rerio (zebrafish) ]

Gene ID: 322258, updated on 14-Feb-2019

Summary

Official Symbol
cct5provided by ZNC
Official Full Name
chaperonin containing TCP1, subunit 5 (epsilon)provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-977
See related
Ensembl:ENSDARG00000045399
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
unm_tf212; wu:fb54h08
Orthologs

Genomic context

See cct5 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (16905218..16912894)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (16760799..16768475)
103 previous assembly Zv9 (GCF_000002035.4) 24 NC_007135.5 (17454323..17461999)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A Neighboring gene 5-methyltetrahydrofolate-homocysteine methyltransferase reductase Neighboring gene carboxymethylenebutenolidase homolog (Pseudomonas) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene kelch-like family member 15

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
protein folding IEA
Inferred from Electronic Annotation
more info
 
skeletal muscle thin filament assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
chaperonin-containing T-complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
T-complex protein 1 subunit epsilon
Names
TCP-1 epsilon
unm tf212

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212613.1NP_997778.1  T-complex protein 1 subunit epsilon

    See identical proteins and their annotated locations for NP_997778.1

    Status: PROVISIONAL

    Source sequence(s)
    AY398321
    UniProtKB/TrEMBL
    Q6NVI6
    Related
    ENSDARP00000066759.3, ENSDART00000066760.4
    Conserved Domains (2) summary
    cd03339
    Location:10535
    TCP1_epsilon; TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...
    pfam00118
    Location:44533
    Cpn60_TCP1; TCP-1/cpn60 chaperonin family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    16905218..16912894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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