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prmt1 protein arginine methyltransferase 1 [ Danio rerio (zebrafish) ]

Gene ID: 321974, updated on 25-Aug-2020

Summary

Official Symbol
prmt1provided by ZNC
Official Full Name
protein arginine methyltransferase 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-693
See related
Ensembl:ENSDARG00000010246
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
PRM; zf1; hrmt1; fb39h07; hrmt1l2; zgc:66201; wu:fb39h07
Orthologs

Genomic context

See prmt1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (32356833..32363021, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (32225119..32231307, complement)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (32493809..32499997, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103910269 Neighboring gene prolactin Neighboring gene adaptor related protein complex 2 subunit alpha 1 Neighboring gene si:ch211-195b15.8

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC66201

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
S-adenosylmethionine-dependent methyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
arginine N-methyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
protein-arginine N-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
convergent extension involved in gastrulation IMP
Inferred from Mutant Phenotype
more info
PubMed 
histone H4-R3 methylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
histone H4-R3 methylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
methylation IEA
Inferred from Electronic Annotation
more info
 
peptidyl-arginine methylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
protein arginine N-methyltransferase 1
Names
HMT1 hnRNP methyltransferase-like 2
NP_956944.2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200650.2NP_956944.2  protein arginine N-methyltransferase 1

    Status: VALIDATED

    Source sequence(s)
    BX511021, CR936975, EH455208, EH509404, EH555053
    UniProtKB/TrEMBL
    F1R3J9
    Related
    ENSDARP00000010384.7, ENSDART00000012630.9
    Conserved Domains (1) summary
    pfam12847
    Location:65169
    Methyltransf_18; Methyltransferase domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    32356833..32363021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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