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xrn2 5'-3' exoribonuclease 2 [ Danio rerio (zebrafish) ]

Gene ID: 321940, updated on 13-Jun-2020

Summary

Official Symbol
xrn2provided by ZNC
Official Full Name
5'-3' exoribonuclease 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2874
See related
Ensembl:ENSDARG00000101900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:55717; wu:fb38g12; wu:fj53d06
Orthologs

Genomic context

See xrn2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
31
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (48810491..48898560, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (48979274..49067343, complement)
103 previous assembly Zv9 (GCF_000002035.4) 20 NC_007131.5 (48985939..49074008)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 61 Neighboring gene uncharacterized LOC110438203 Neighboring gene NK2 homeobox 4b Neighboring gene uncharacterized LOC110438201 Neighboring gene uncharacterized LOC110438204 Neighboring gene microRNA mir-2193 Neighboring gene crooked neck pre-mRNA splicing factor 1

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
5'-3' exoribonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
5'-3' exoribonuclease activity IEA
Inferred from Electronic Annotation
more info
 
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
exonuclease activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
nuclease activity IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
nuclear-transcribed mRNA catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleobase-containing compound metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
5'-3' exoribonuclease 2
NP_001001944.2
XP_005160932.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001944.2NP_001001944.2  5'-3' exoribonuclease 2

    Status: VALIDATED

    Source sequence(s)
    BX005124, CT573061
    UniProtKB/TrEMBL
    A0A0R4ISJ3
    Related
    ENSDARP00000138850.1, ENSDART00000163071.2
    Conserved Domains (2) summary
    COG5049
    Location:1796
    XRN1; 5'-3' exonuclease [Replication, recombination and repair]
    pfam03159
    Location:1253
    XRN_N; XRN 5'-3' exonuclease N-terminus

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    48810491..48898560 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005160875.4XP_005160932.1  5'-3' exoribonuclease 2 isoform X1

    Conserved Domains (2) summary
    COG5049
    Location:1782
    XRN1; 5'-3' exonuclease [Replication, recombination and repair]
    pfam03159
    Location:1253
    XRN_N; XRN 5'-3' exonuclease N-terminus
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