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wdr12 WD repeat domain 12 [ Danio rerio (zebrafish) ]

Gene ID: 321652, updated on 13-Jun-2020

Summary

Official Symbol
wdr12provided by ZNC
Official Full Name
WD repeat domain 12provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-371
See related
Ensembl:ENSDARG00000003287
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
YTM1; fb24f09; zgc:55609; wu:fb24f09
Orthologs

Genomic context

See wdr12 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (9630727..9646236, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (9395188..9410697, complement)
103 previous assembly Zv9 (GCF_000002035.4) 6 NC_007117.5 (8080462..8095971)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 27, subfamily C, polypeptide 1 Neighboring gene excision repair cross-complementation group 3 Neighboring gene transcription factor 23 Neighboring gene NOP58 ribonucleoprotein homolog (yeast)

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ribonucleoprotein complex binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ISS
Inferred from Sequence or Structural Similarity
more info
 
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ISS
Inferred from Sequence or Structural Similarity
more info
 
rRNA processing IEA
Inferred from Electronic Annotation
more info
 
regulation of cell cycle ISS
Inferred from Sequence or Structural Similarity
more info
 
ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
PeBoW complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
PeBoW complex ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleolus ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
preribosome, large subunit precursor IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
preribosome, large subunit precursor ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
ribosome biogenesis protein wdr12

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199557.1NP_955851.1  ribosome biogenesis protein wdr12

    See identical proteins and their annotated locations for NP_955851.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044198
    UniProtKB/Swiss-Prot
    Q6NX08
    UniProtKB/TrEMBL
    B2GTD1
    Related
    ENSDARP00000004327.6, ENSDART00000012903.7
    Conserved Domains (4) summary
    COG2319
    Location:92414
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:100412
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08154
    Location:470
    NLE; NLE (NUC135) domain
    sd00039
    Location:144187
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    9630727..9646236 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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