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Samd5 sterile alpha motif domain containing 5 [ Mus musculus (house mouse) ]

Gene ID: 320825, updated on 26-Sep-2022

Summary

Official Symbol
Samd5provided by MGI
Official Full Name
sterile alpha motif domain containing 5provided by MGI
Primary source
MGI:MGI:2444815
See related
Ensembl:ENSMUSG00000060487 AllianceGenome:MGI:2444815
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
E130306M17Rik
Summary
Located in cytoplasm. Is expressed in diencephalon roof plate and thalamus mantle layer. Orthologous to human SAMD5 (sterile alpha motif domain containing 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 1.4), whole brain E14.5 (RPKM 1.0) and 23 other tissues See more
Orthologs
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Genomic context

See Samd5 in Genome Data Viewer
Location:
10; 10 A1
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (9138205..9551670, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (9262461..9675926, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene SAM and SH3 domain containing 1 Neighboring gene predicted gene, 48727 Neighboring gene predicted gene, 51794 Neighboring gene predicted gene, 48750 Neighboring gene cytochrome c, somatic pseudogene Neighboring gene predicted gene, 31471 Neighboring gene predicted gene 6150

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
sterile alpha motif domain-containing protein 5
Names
SAM domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177271.3NP_796245.2  sterile alpha motif domain-containing protein 5

    See identical proteins and their annotated locations for NP_796245.2

    Status: VALIDATED

    Source sequence(s)
    AK087498, AK132444
    Consensus CDS
    CCDS35836.1
    UniProtKB/Swiss-Prot
    Q3V1H9
    UniProtKB/TrEMBL
    A0A0R4J186
    Related
    ENSMUSP00000097648.3, ENSMUST00000100070.5
    Conserved Domains (2) summary
    cd09527
    Location:264
    SAM_Samd5; SAM domain of Samd5 subfamily
    smart00454
    Location:665
    SAM; Sterile alpha motif

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    9138205..9551670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017313970.2XP_017169459.1  sterile alpha motif domain-containing protein 5 isoform X1

    Conserved Domains (1) summary
    cd09527
    Location:264
    SAM_Samd5; SAM domain of Samd5 subfamily