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Tmem117 transmembrane protein 117 [ Mus musculus (house mouse) ]

Gene ID: 320709, updated on 26-Sep-2022

Summary

Official Symbol
Tmem117provided by MGI
Official Full Name
transmembrane protein 117provided by MGI
Primary source
MGI:MGI:2444580
See related
Ensembl:ENSMUSG00000063296 AllianceGenome:MGI:2444580
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
B930062P21Rik
Summary
Predicted to be involved in intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum and plasma membrane. Orthologous to human TMEM117 (transmembrane protein 117). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in large intestine adult (RPKM 7.6), cerebellum adult (RPKM 2.2) and 14 other tissues See more
Orthologs
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Genomic context

See Tmem117 in Genome Data Viewer
Location:
15; 15 E3
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (94527066..94993978)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (94629185..95096097)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30754 Neighboring gene twinfilin actin binding protein 1 Neighboring gene predicted gene, 25546 Neighboring gene predicted gene, 31007 Neighboring gene predicted gene, 23129 Neighboring gene predicted gene, 52203 Neighboring gene predicted gene, 30953 Neighboring gene uncharacterized LOC100043315 Neighboring gene predicted gene, 30810 Neighboring gene predicted gene, 31075

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178789.4NP_848904.1  transmembrane protein 117

    See identical proteins and their annotated locations for NP_848904.1

    Status: PROVISIONAL

    Source sequence(s)
    AC102905, AC118683, AC147160, AC158918
    Consensus CDS
    CCDS27774.1
    UniProtKB/Swiss-Prot
    Q8BH18, Q8C6X8
    UniProtKB/TrEMBL
    A0A8C6I6C5
    Related
    ENSMUSP00000079038.5, ENSMUST00000080141.6
    Conserved Domains (1) summary
    pfam15113
    Location:4403
    TMEM117; TMEM117 protein family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    94527066..94993978
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)