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Tmem104 transmembrane protein 104 [ Mus musculus (house mouse) ]

Gene ID: 320534, updated on 26-Sep-2022

Summary

Official Symbol
Tmem104provided by MGI
Official Full Name
transmembrane protein 104provided by MGI
Primary source
MGI:MGI:2444222
See related
Ensembl:ENSMUSG00000045980 AllianceGenome:MGI:2444222
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mFLJ00021; C630005D06Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alimentary system; brainstem; reproductive system; spleen; and trachea. Orthologous to human TMEM104 (transmembrane protein 104). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 13.5), ovary adult (RPKM 10.2) and 28 other tissues See more
Orthologs
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Genomic context

See Tmem104 in Genome Data Viewer
Location:
11; 11 E2
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (115078313..115137851)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (115187487..115247025)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene RAB37, member RAS oncogene family Neighboring gene CD300 molecule like family member F Neighboring gene NHERF family PDZ scaffold protein 1 Neighboring gene N-acetyltransferase 9 (GCN5-related, putative) Neighboring gene glutamate receptor, ionotropic, NMDA2C (epsilon 3) Neighboring gene ferredoxin reductase

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033393.2NP_001028565.1  transmembrane protein 104

    See identical proteins and their annotated locations for NP_001028565.1

    Status: VALIDATED

    Source sequence(s)
    AK171457, AL603828, BE948925, BY091433
    Consensus CDS
    CCDS25623.1
    UniProtKB/Swiss-Prot
    Q3TB48, Q3U2Y2
    Related
    ENSMUSP00000056805.7, ENSMUST00000061450.7
    Conserved Domains (1) summary
    cl00456
    Location:25444
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    115078313..115137851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036156767.1XP_036012660.1  transmembrane protein 104 isoform X1

    Conserved Domains (1) summary
    COG0814
    Location:78356
    SdaC; Amino acid permease [Amino acid transport and metabolism]