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Cadps2 Ca2+-dependent activator protein for secretion 2 [ Mus musculus (house mouse) ]

Gene ID: 320405, updated on 26-Sep-2022

Summary

Official Symbol
Cadps2provided by MGI
Official Full Name
Ca2+-dependent activator protein for secretion 2provided by MGI
Primary source
MGI:MGI:2443963
See related
Ensembl:ENSMUSG00000017978 AllianceGenome:MGI:2443963
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cpd2; Caps2; Caps-2; A230044C21Rik
Summary
Predicted to enable lipid binding activity and metal ion binding activity. Involved in synaptic vesicle priming. Acts upstream of or within cellular response to starvation; hematopoietic stem cell homeostasis; and positive regulation of exocytosis. Located in several cellular components, including glutamatergic synapse; parallel fiber to Purkinje cell synapse; and synaptic membrane. Is expressed in several structures, including brain; genitourinary system; sensory organ; skeleton; and spinal cord. Used to study autism spectrum disorder. Orthologous to human CADPS2 (calcium dependent secretion activator 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cerebellum adult (RPKM 18.3), cortex adult (RPKM 6.9) and 9 other tissues See more
Orthologs
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Genomic context

See Cadps2 in Genome Data Viewer
Location:
6; 6 A3.1
Exon count:
33
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (23262772..23840662, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (23262773..23841175, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene SET translocation pseudogene Neighboring gene Fez family zinc finger 1 Neighboring gene predicted gene, 38775 Neighboring gene ring finger protein 133 Neighboring gene ring finger protein 148 Neighboring gene cell division cycle 20 homolog pseudogene Neighboring gene taste receptor, type 2, member 118 Neighboring gene solute carrier family 13 (sodium/sulfate symporters), member 1 Neighboring gene predicted gene 20706

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (4)  1 citation
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in glutamatergic synapse IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in glutamatergic synapse IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in glutamatergic synapse IMP
Inferred from Mutant Phenotype
more info
PubMed 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in parallel fiber to Purkinje cell synapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in postsynaptic membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in presynapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in presynaptic membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 
NOT located_in synaptic vesicle IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
calcium-dependent secretion activator 2
Names
cerebellum postnatal development associated protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252105.2NP_001239034.1  calcium-dependent secretion activator 2 isoform 2

    See identical proteins and their annotated locations for NP_001239034.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (2, also known as CAPS2a) that is shorter than isoform 1.
    Source sequence(s)
    AC153636, AC153639, AC153831, AC155850, AC167725
    Consensus CDS
    CCDS57412.1
    UniProtKB/Swiss-Prot
    Q8BYR5
    UniProtKB/TrEMBL
    A4PI80
    Related
    ENSMUSP00000111015.3, ENSMUST00000115358.9
    Conserved Domains (4) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam00169
    Location:493592
    PH; PH domain
    pfam06292
    Location:802902
    DUF1041; Domain of Unknown Function (DUF1041)
  2. NM_001252106.2NP_001239035.1  calcium-dependent secretion activator 2 isoform 3

    See identical proteins and their annotated locations for NP_001239035.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two alternate in-frame exons in the central coding region, but includes an additional in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (3, also known as CAPS2c) is shorter than isoform 1.
    Source sequence(s)
    AC153636, AC153639, AC153831, AC155850, AC167725
    UniProtKB/TrEMBL
    A4PI80, A4PI82
    Conserved Domains (4) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485611
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam00169
    Location:493558
    PH; PH domain
    pfam06292
    Location:735835
    DUF1041; Domain of Unknown Function (DUF1041)
  3. NM_001252107.2NP_001239036.1  calcium-dependent secretion activator 2 isoform 4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks several exons in the central and 3' coding regions, but includes an alternate 3' exon and thus differs in its 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (4, also known as CAPS2d) has a distinct and significantly shorter C-terminus, compared to isoform 1.
    Source sequence(s)
    AC153636, AC153831, AC155850, AC167725
    Consensus CDS
    CCDS57413.1
    UniProtKB/TrEMBL
    A4PI80, A4PI83
    Related
    ENSMUSP00000111013.3, ENSMUST00000115356.3
    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam00169
    Location:493592
    PH; PH domain
  4. NM_001252108.2NP_001239037.1  calcium-dependent secretion activator 2 isoform 5

    See identical proteins and their annotated locations for NP_001239037.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks several exons in the central and 3' coding regions, but includes an alternate 3' exon and thus differs in its 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (5, also known as CAPS2e) has a distinct and significantly shorter C-terminus, compared to isoform 1.
    Source sequence(s)
    AC153636, AC153831, AC155850, AC167725
    UniProtKB/TrEMBL
    A4PI80, A4PI84
    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam00169
    Location:493592
    PH; PH domain
  5. NM_001252109.1NP_001239038.1  calcium-dependent secretion activator 2 isoform 6

    See identical proteins and their annotated locations for NP_001239038.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) lacks several exons in the central and 3' coding regions, but includes an alternate 3' exon and thus differs in its 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (6, also known as CAPS2f) has a distinct and significantly shorter C-terminus, compared to isoform 1.
    Source sequence(s)
    AB291946, AC153636
    UniProtKB/TrEMBL
    A4PI80
  6. NM_001252110.2NP_001239039.1  calcium-dependent secretion activator 2 isoform 7

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) lacks three in-frame exons in the central coding region, but includes an additional in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (7) is shorter than isoform 1.
    Source sequence(s)
    AC153636, AC153639, AC153831, AC155850, AC167725
    Consensus CDS
    CCDS57411.1
    UniProtKB/TrEMBL
    A4PI80
    Related
    ENSMUSP00000111018.3, ENSMUST00000115361.9
    Conserved Domains (4) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam00169
    Location:493592
    PH; PH domain
    pfam06292
    Location:802892
    DUF1041; Domain of Unknown Function (DUF1041)
  7. NM_001403608.1NP_001390537.1  calcium-dependent secretion activator 2 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC153636, AC153639, AC153831, AC155850, AC167725
  8. NM_001403630.1NP_001390559.1  calcium-dependent secretion activator 2 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AC153636, AC153639, AC153831, AC155850, AC167725
    UniProtKB/Swiss-Prot
    Q8K3K6
  9. NM_153163.5NP_694803.3  calcium-dependent secretion activator 2 isoform 1

    See identical proteins and their annotated locations for NP_694803.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1, also known as CAPS2b).
    Source sequence(s)
    AC153636, AC153639, AC153831, AC155850, AC167725
    Consensus CDS
    CCDS39439.1
    UniProtKB/TrEMBL
    A4PI80, A4PI81
    Related
    ENSMUSP00000018122.8, ENSMUST00000018122.14
    Conserved Domains (4) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam00169
    Location:493592
    PH; PH domain
    pfam06292
    Location:802902
    DUF1041; Domain of Unknown Function (DUF1041)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    23262772..23840662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030255458.2XP_030111318.1  calcium-dependent secretion activator 2 isoform X14

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802890
    DUF1041; Domain of Unknown Function (DUF1041)
  2. XM_036166226.1XP_036022119.1  calcium-dependent secretion activator 2 isoform X7

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802892
    DUF1041; Domain of Unknown Function (DUF1041)
  3. XM_006505111.3XP_006505174.1  calcium-dependent secretion activator 2 isoform X5

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802890
    DUF1041; Domain of Unknown Function (DUF1041)
  4. XM_030255457.2XP_030111317.1  calcium-dependent secretion activator 2 isoform X13

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802893
    DUF1041; Domain of Unknown Function (DUF1041)
  5. XM_006505112.3XP_006505175.1  calcium-dependent secretion activator 2 isoform X6

    UniProtKB/Swiss-Prot
    Q8BYR5
    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802893
    DUF1041; Domain of Unknown Function (DUF1041)
  6. XM_006505109.3XP_006505172.1  calcium-dependent secretion activator 2 isoform X3

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802893
    DUF1041; Domain of Unknown Function (DUF1041)
  7. XM_006505115.3XP_006505178.1  calcium-dependent secretion activator 2 isoform X12

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802897
    DUF1041; Domain of Unknown Function (DUF1041)
  8. XM_036166228.1XP_036022121.1  calcium-dependent secretion activator 2 isoform X16

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802899
    DUF1041; Domain of Unknown Function (DUF1041)
  9. XM_036166227.1XP_036022120.1  calcium-dependent secretion activator 2 isoform X10

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802899
    DUF1041; Domain of Unknown Function (DUF1041)
  10. XM_006505110.3XP_006505173.1  calcium-dependent secretion activator 2 isoform X4

    See identical proteins and their annotated locations for XP_006505173.1

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802897
    DUF1041; Domain of Unknown Function (DUF1041)
  11. XM_006505108.3XP_006505171.1  calcium-dependent secretion activator 2 isoform X2

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802897
    DUF1041; Domain of Unknown Function (DUF1041)
  12. XM_006505113.3XP_006505176.1  calcium-dependent secretion activator 2 isoform X8

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802900
    DUF1041; Domain of Unknown Function (DUF1041)
  13. XM_017321641.3XP_017177130.1  calcium-dependent secretion activator 2 isoform X15

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802900
    DUF1041; Domain of Unknown Function (DUF1041)
  14. XM_017321640.3XP_017177129.1  calcium-dependent secretion activator 2 isoform X11

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802900
    DUF1041; Domain of Unknown Function (DUF1041)
  15. XM_006505107.3XP_006505170.1  calcium-dependent secretion activator 2 isoform X1

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802900
    DUF1041; Domain of Unknown Function (DUF1041)
  16. XM_006505114.4XP_006505177.1  calcium-dependent secretion activator 2 isoform X9

    Conserved Domains (3) summary
    smart00239
    Location:369452
    C2; Protein kinase C conserved region 2 (CalB)
    cd01234
    Location:485604
    PH_CADPS; Ca2+-dependent activator protein (also called CAPS) Pleckstrin homology (PH) domain
    pfam06292
    Location:802900
    DUF1041; Domain of Unknown Function (DUF1041)