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9530052C20Rik RIKEN cDNA 9530052C20 gene [ Mus musculus (house mouse) ]

Gene ID: 320229, updated on 8-Feb-2024

Summary

Official Symbol
9530052C20Rikprovided by MGI
Official Full Name
RIKEN cDNA 9530052C20 geneprovided by MGI
Primary source
MGI:MGI:2443632
See related
AllianceGenome:MGI:2443632
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

See 9530052C20Rik in Genome Data Viewer
Location:
3 H1; 3 66.69 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (142588256..142600407)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (142882495..142894646)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene general transcription factor IIB Neighboring gene predicted gene, 24457 Neighboring gene predicted gene, 25965 Neighboring gene protein kinase N2 Neighboring gene STARR-positive B cell enhancer mm9_chr3:142545199-142545499 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:142562224-142562407 Neighboring gene STARR-seq mESC enhancer starr_09164 Neighboring gene STARR-seq mESC enhancer starr_09165 Neighboring gene STARR-seq mESC enhancer starr_09166 Neighboring gene predicted gene, 33289 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene RIKEN cDNA 4930519L02 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_152127.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC102196, AK085299

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    142588256..142600407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)