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Mir9-2hg Mir9-2 host gene [ Mus musculus (house mouse) ]

Gene ID: 320203, updated on 5-Mar-2024

Summary

Official Symbol
Mir9-2hgprovided by MGI
Official Full Name
Mir9-2 host geneprovided by MGI
Primary source
MGI:MGI:2443574
See related
Ensembl:ENSMUSG00000050334 AllianceGenome:MGI:2443574
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Visc-1; ECONEXIN; EyeLinc1; 2810449C10Rik; C130071C03Rik
Summary
Is expressed in several structures, including integumental system; limb; liver; metanephros; and nervous system. Orthologous to human LINC00461 (long intergenic non-protein coding RNA 461). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 2.7), CNS E14 (RPKM 2.2) and 5 other tissues See more
Orthologs
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Genomic context

See Mir9-2hg in Genome Data Viewer
Location:
13 C3; 13 43.68 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (83869500..83889427)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (83721381..83741308)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33274 Neighboring gene STARR-positive B cell enhancer ABC_E5408 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83664236-83664536 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83666025-83666326 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83678903-83679204 Neighboring gene myocyte enhancer factor 2C Neighboring gene STARR-positive B cell enhancer ABC_E8895 Neighboring gene VISTA enhancer mm1175 Neighboring gene STARR-positive B cell enhancer ABC_E747 Neighboring gene predicted gene, 26803 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83788426-83788726 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83789544-83789845 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83790286-83790587 Neighboring gene STARR-positive B cell enhancer ABC_E10805 Neighboring gene STARR-seq mESC enhancer starr_35152 Neighboring gene STARR-seq mESC enhancer starr_35153 Neighboring gene microRNA 9b-2 Neighboring gene microRNA 9-2 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_35158 Neighboring gene lactate dehydrogenase A pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015561.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3, also known as Visc-3) differs at the 5' and 3' ends compared to variant 1.
    Source sequence(s)
    AK039679
    Related
    ENSMUST00000182788.2
  2. NR_152244.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and is also known as Visc-1a.
    Source sequence(s)
    BY244448, CU074400, KF032589
    Related
    ENSMUST00000244522.1
  3. NR_152245.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1 and is also known as Visc-1b.
    Source sequence(s)
    BY244448, CU074400, KF032590
    Related
    ENSMUST00000131907.10
  4. NR_152246.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CU074400
    Related
    ENSMUST00000243265.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    83869500..83889427
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177100.2: Suppressed sequence

    Description
    NM_177100.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.