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E230016M11Rik RIKEN cDNA E230016M11 gene [ Mus musculus (house mouse) ]

Gene ID: 320172, updated on 8-Feb-2024

Summary

Official Symbol
E230016M11Rikprovided by MGI
Official Full Name
RIKEN cDNA E230016M11 geneprovided by MGI
Primary source
MGI:MGI:2443524
See related
Ensembl:ENSMUSG00000087231 AllianceGenome:MGI:2443524
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in ovary adult (RPKM 33.5), duodenum adult (RPKM 21.2) and 27 other tissues See more
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Genomic context

Location:
6 C1; 6 30.72 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (67013583..67057636)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (67036599..67080652)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), gamma 12 Neighboring gene STARR-seq mESC enhancer starr_16163 Neighboring gene STARR-seq mESC enhancer starr_16164 Neighboring gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr6:66987352-66987653 Neighboring gene predicted gene, 53333 Neighboring gene predicted gene, 25260 Neighboring gene growth arrest and DNA-damage-inducible 45 alpha Neighboring gene STARR-seq mESC enhancer starr_16168 Neighboring gene predicted gene, 29928 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:67078989-67079098 Neighboring gene STARR-seq mESC enhancer starr_16169 Neighboring gene RIKEN cDNA A430010J10 gene Neighboring gene STARR-positive B cell enhancer ABC_E2786

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040278.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK029473
    Related
    ENSMUST00000130657.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    67013583..67057636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)