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BC049715 cDNA sequence BC049715 [ Mus musculus (house mouse) ]

Gene ID: 320135, updated on 12-Aug-2019

Summary

Official Symbol
BC049715provided by MGI
Official Full Name
cDNA sequence BC049715provided by MGI
Primary source
MGI:MGI:3605234
See related
Ensembl:ENSMUSG00000047515
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 12.6) and liver E14.5 (RPKM 0.5) See more
Orthologs

Genomic context

See BC049715 in Genome Data Viewer
Location:
6; 6 G1
Exon count:
6
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (136828160..136841920)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (136777364..136789075)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene H4 histone 16 Neighboring gene H2J.A histone Neighboring gene WW domain binding protein 11 Neighboring gene single-pass membrane protein with coiled-coil domains 3 Neighboring gene ADP-ribosyltransferase 4 Neighboring gene matrix Gla protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C12orf60 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178776.3NP_848891.2  uncharacterized protein C12orf60 homolog

    See identical proteins and their annotated locations for NP_848891.2

    Status: VALIDATED

    Source sequence(s)
    BC049715, BX638225
    Consensus CDS
    CCDS39685.1
    UniProtKB/Swiss-Prot
    Q810N5
    Related
    ENSMUSP00000049512.6, ENSMUST00000052702.6
    Conserved Domains (1) summary
    pfam15047
    Location:9235
    DUF4533; Protein of unknown function (DUF4533)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p6 C57BL/6J

    Range
    136828160..136841920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017321634.2XP_017177123.1  uncharacterized protein C12orf60 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q810N5
    Conserved Domains (1) summary
    pfam15047
    Location:9235
    DUF4533; Protein of unknown function (DUF4533)
  2. XM_006506262.4XP_006506325.1  uncharacterized protein C12orf60 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506325.1

    UniProtKB/Swiss-Prot
    Q810N5
    Conserved Domains (1) summary
    pfam15047
    Location:9235
    DUF4533; Protein of unknown function (DUF4533)
  3. XM_006506265.4XP_006506328.1  uncharacterized protein C12orf60 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506328.1

    UniProtKB/Swiss-Prot
    Q810N5
    Conserved Domains (1) summary
    pfam15047
    Location:9235
    DUF4533; Protein of unknown function (DUF4533)
  4. XM_017321636.2XP_017177125.1  uncharacterized protein C12orf60 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q810N5
    Conserved Domains (1) summary
    pfam15047
    Location:9235
    DUF4533; Protein of unknown function (DUF4533)
  5. XM_006506264.4XP_006506327.1  uncharacterized protein C12orf60 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506327.1

    UniProtKB/Swiss-Prot
    Q810N5
    Conserved Domains (1) summary
    pfam15047
    Location:9235
    DUF4533; Protein of unknown function (DUF4533)
  6. XM_017321635.2XP_017177124.1  uncharacterized protein C12orf60 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q810N5
    Conserved Domains (1) summary
    pfam15047
    Location:9235
    DUF4533; Protein of unknown function (DUF4533)
  7. XM_006506263.4XP_006506326.1  uncharacterized protein C12orf60 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506326.1

    UniProtKB/Swiss-Prot
    Q810N5
    Conserved Domains (1) summary
    pfam15047
    Location:9235
    DUF4533; Protein of unknown function (DUF4533)
  8. XM_030255455.1XP_030111315.1  uncharacterized protein C12orf60 homolog isoform X1

  9. XM_006506266.3XP_006506329.1  uncharacterized protein C12orf60 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506329.1

    UniProtKB/Swiss-Prot
    Q810N5
    Related
    ENSMUSP00000145015.1, ENSMUST00000203499.1
    Conserved Domains (1) summary
    pfam15047
    Location:9235
    DUF4533; Protein of unknown function (DUF4533)
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