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Fbxl13 F-box and leucine-rich repeat protein 13 [ Mus musculus (house mouse) ]

Gene ID: 320118, updated on 30-Apr-2024

Summary

Official Symbol
Fbxl13provided by MGI
Official Full Name
F-box and leucine-rich repeat protein 13provided by MGI
Primary source
MGI:MGI:2443416
See related
Ensembl:ENSMUSG00000048520 AllianceGenome:MGI:2443416
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4921539K22Rik
Summary
Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm; cytoskeleton; and motile cilium. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in brain; lung; and reproductive system. Orthologous to human FBXL13 (F-box and leucine rich repeat protein 13). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 14.6) and ovary adult (RPKM 0.6) See more
Orthologs
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Genomic context

See Fbxl13 in Genome Data Viewer
Location:
5 A3; 5 9.83 cM
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (21688845..21850696, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (21483847..21645698, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene gamma-secretase activating protein Neighboring gene STARR-positive B cell enhancer ABC_E6308 Neighboring gene coiled-coil domain containing 146 Neighboring gene VISTA enhancer mm186 Neighboring gene STARR-positive B cell enhancer ABC_E6309 Neighboring gene predicted gene, 50626 Neighboring gene STARR-positive B cell enhancer ABC_E6310 Neighboring gene STARR-seq mESC enhancer starr_12565 Neighboring gene STARR-positive B cell enhancer ABC_E3562 Neighboring gene STARR-positive B cell enhancer ABC_E152 Neighboring gene fibrinogen-like protein 2 Neighboring gene family with sequence similarity 185, member A Neighboring gene STARR-seq mESC enhancer starr_12566 Neighboring gene STARR-seq mESC enhancer starr_12567 Neighboring gene leucine rich repeat containing 17 Neighboring gene STARR-seq mESC enhancer starr_12568 Neighboring gene STARR-seq mESC enhancer starr_12569 Neighboring gene predicted gene 6543 Neighboring gene STARR-positive B cell enhancer ABC_E11283 Neighboring gene protein archease pseudogene Neighboring gene STARR-seq mESC enhancer starr_12572 Neighboring gene armadillo repeat containing 10 Neighboring gene N-acyl phosphatidylethanolamine phospholipase D Neighboring gene microRNA 12197

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3)  1 citation
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
F-box and leucine-rich repeat protein 13
Names
F-box/LRR-repeat protein 13
dynein regulatory complex subunit 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199632.1NP_001186561.1  F-box and leucine-rich repeat protein 13 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript and it encodes the longer protein (isoform a).
    Source sequence(s)
    BB614373, BC145291, CO797010
    UniProtKB/TrEMBL
    B7ZNK1
    Conserved Domains (5) summary
    cd09293
    Location:536752
    AMN1; Antagonist of mitotic exit network protein 1
    sd00033
    Location:486523
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:537564
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:240286
    F-box-like; F-box-like
    cl06673
    Location:5492
    Extradiol_Dioxygenase_3A_like; Subunit A of Class III extradiol dioxygenases
  2. NM_177076.4NP_796050.2  F-box and leucine-rich repeat protein 13 isoform b

    See identical proteins and their annotated locations for NP_796050.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1. The resulting protein (isoform b) is shorter when it is compared to isoform a.
    Source sequence(s)
    BB614373, BC145292, CO797010
    Consensus CDS
    CCDS51429.1
    UniProtKB/Swiss-Prot
    Q8CDE9, Q8CDU4
    UniProtKB/TrEMBL
    B7ZNK2
    Related
    ENSMUSP00000052716.5, ENSMUST00000051358.11
    Conserved Domains (5) summary
    cd09293
    Location:503719
    AMN1; Antagonist of mitotic exit network protein 1
    sd00033
    Location:453470
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:504531
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:240286
    F-box-like; F-box-like
    cl06673
    Location:5492
    Extradiol_Dioxygenase_3A_like; Subunit A of Class III extradiol dioxygenases

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    21688845..21850696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006535728.3XP_006535791.1  F-box and leucine-rich repeat protein 13 isoform X3

    UniProtKB/TrEMBL
    B7ZNK1
    Conserved Domains (4) summary
    cd09293
    Location:536752
    AMN1; Antagonist of mitotic exit network protein 1
    sd00033
    Location:486523
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:537564
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:240284
    F-box-like
  2. XM_011249772.2XP_011248074.1  F-box and leucine-rich repeat protein 13 isoform X5

    Conserved Domains (2) summary
    cd09293
    Location:91223
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:5479
    LRR_AMN1; leucine-rich repeat [structural motif]
  3. XM_011249771.4XP_011248073.1  F-box and leucine-rich repeat protein 13 isoform X4

    Conserved Domains (3) summary
    cd09293
    Location:211380
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:185211
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:145189
    F-box-like
  4. XM_011249770.4XP_011248072.1  F-box and leucine-rich repeat protein 13 isoform X2

    Conserved Domains (3) summary
    cd09293
    Location:306572
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:331356
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:240284
    F-box-like
  5. XM_011249769.3XP_011248071.1  F-box and leucine-rich repeat protein 13 isoform X1

    Conserved Domains (3) summary
    cd09293
    Location:306475
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:280306
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:240284
    F-box-like