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Slc38a11 solute carrier family 38, member 11 [ Mus musculus (house mouse) ]

Gene ID: 320106, updated on 8-Dec-2022

Summary

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Official Symbol
Slc38a11provided by MGI
Official Full Name
solute carrier family 38, member 11provided by MGI
Primary source
MGI:MGI:2443383
See related
Ensembl:ENSMUSG00000061171 AllianceGenome:MGI:2443383
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9330158F14Rik
Summary
Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to act upstream of or within amino acid transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cerebellum; ductus deferens; epididymis; ileum; and midbrain. Orthologous to human SLC38A11 (solute carrier family 38 member 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in adrenal adult (RPKM 1.8), bladder adult (RPKM 0.8) and 17 other tissues See more
Orthologs
human all
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Genomic context

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See Slc38a11 in Genome Data Viewer
Location:
2; 2 C1.3
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (65144007..65194606, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (65313663..65364026, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene 13593 Neighboring gene microRNA 6337 Neighboring gene predicted gene, 24138

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Sour Sensing from the Tongue to the Brain. Zhang J, et al. Cell, 2019 Oct 3. PMID 31543264
  2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  3. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3) 
  • Endonuclease-mediated (3)  1 citation

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables L-amino acid transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
acts_upstream_of_or_within amino acid transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sodium ion transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative sodium-coupled neutral amino acid transporter 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177074.2 → NP_796048.2  putative sodium-coupled neutral amino acid transporter 11

    See identical proteins and their annotated locations for NP_796048.2

    Status: VALIDATED

    Source sequence(s)
    AK139966, CJ055756
    Consensus CDS
    CCDS38129.1
    UniProtKB/Swiss-Prot
    A2ASI1, Q3USY0
    Related
    ENSMUSP00000108039.2, ENSMUST00000112420.8
    Conserved Domains (2) summary
    COG0814
    Location:39 → 413
    SdaC; Amino acid permease [Amino acid transport and metabolism]
    cl00456
    Location:32 → 420
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    65144007..65194606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036162296.1 → XP_036018189.1  putative sodium-coupled neutral amino acid transporter 11 isoform X1

    Conserved Domains (1) summary
    cl00456
    Location:32 → 398
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_036162297.1 → XP_036018190.1  putative sodium-coupled neutral amino acid transporter 11 isoform X2

    Conserved Domains (1) summary
    cl00456
    Location:24 → 223
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_036162298.1 → XP_036018191.1  putative sodium-coupled neutral amino acid transporter 11 isoform X3

    Conserved Domains (1) summary
    cl00456
    Location:1 → 192
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_030251752.1 → XP_030107612.1  putative sodium-coupled neutral amino acid transporter 11 isoform X3

    Conserved Domains (1) summary
    cl00456
    Location:1 → 192
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3USY0.2 GenPept UniProtKB/Swiss-Prot:Q3USY0

Gene LinkOut

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