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6430550D23Rik RIKEN cDNA 6430550D23 gene [ Mus musculus (house mouse) ]

Gene ID: 320095, updated on 4-Nov-2022

Summary

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Official Symbol
6430550D23Rikprovided by MGI
Official Full Name
RIKEN cDNA 6430550D23 geneprovided by MGI
Primary source
MGI:MGI:2443361
See related
Ensembl:ENSMUSG00000074646 AllianceGenome:MGI:2443361
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Orthologous to human C20orf173 (chromosome 20 open reading frame 173). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 3.4), subcutaneous fat pad adult (RPKM 0.8) and 25 other tissues See more
Orthologs
human all
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Genomic context

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See 6430550D23Rik in Genome Data Viewer
Location:
2; 2 H1
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (155831465..155849957, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (155989545..156008125, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene growth differentiation factor 5 Neighboring gene centrosomal protein 250 Neighboring gene predicted gene, 50621 Neighboring gene ERGIC and golgi 3 Neighboring gene fer-1-like 4 (C. elegans) Neighboring gene AE binding protein 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables beta-galactoside (CMP) alpha-2,3-sialyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process via lactosylceramide IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in protein glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in sialylation IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein C20orf173 homolog
Names
likely orthologue of H. sapiens chromosome 20 open reading frame 173 (C20orf173)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145351.1 → NP_001138823.1  uncharacterized protein C20orf173 homolog isoform 1 precursor

    See identical proteins and their annotated locations for NP_001138823.1

    Status: PREDICTED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL833786, AV496044
    Consensus CDS
    CCDS50775.1
    UniProtKB/TrEMBL
    B7ZCN6, E9Q1X6
    Related
    ENSMUSP00000115643.3, ENSMUST00000139116.9

  2. NM_001145352.2 → NP_001138824.1  uncharacterized protein C20orf173 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL833786
    Consensus CDS
    CCDS50774.1
    UniProtKB/TrEMBL
    B7ZCN5
    Related
    ENSMUSP00000083314.4, ENSMUST00000086145.10

  3. NM_001408012.1 → NP_001394941.1  uncharacterized protein C20orf173 homolog isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AL833786
    UniProtKB/TrEMBL
    B7ZCN6

  4. NM_001408013.1 → NP_001394942.1  uncharacterized protein C20orf173 homolog isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AL833786
    UniProtKB/TrEMBL
    B7ZCN6

  5. NM_001408014.1 → NP_001394943.1  uncharacterized protein C20orf173 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL833786
    UniProtKB/TrEMBL
    B7ZCN5

  6. NM_001408015.1 → NP_001394944.1  uncharacterized protein C20orf173 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL833786
    UniProtKB/TrEMBL
    B7ZCN5

  7. NM_001408016.1 → NP_001394945.1  uncharacterized protein C20orf173 homolog isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL833786

RNA

  1. NR_176443.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL833786

  2. NR_176444.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL833786

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    155831465..155849957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251751.2 → XP_030107611.1  uncharacterized protein C20orf173 homolog isoform X1

    UniProtKB/TrEMBL
    B7ZCN6

  2. XM_006499730.5 → XP_006499793.1  uncharacterized protein C20orf173 homolog isoform X1

    See identical proteins and their annotated locations for XP_006499793.1

    UniProtKB/TrEMBL
    B7ZCN6, E9Q1X6
    Related
    ENSMUSP00000118982.3, ENSMUST00000140657.9

  3. XM_006499729.5 → XP_006499792.1  uncharacterized protein C20orf173 homolog isoform X1

    See identical proteins and their annotated locations for XP_006499792.1

    UniProtKB/TrEMBL
    B7ZCN6, E9Q1X6

  4. XM_006499731.4 → XP_006499794.1  uncharacterized protein C20orf173 homolog isoform X2

  5. XM_006499732.4 → XP_006499795.1  uncharacterized protein C20orf173 homolog isoform X2

    See identical proteins and their annotated locations for XP_006499795.1

    Related
    ENSMUSP00000120293.2, ENSMUST00000144686.8

  6. XM_006499728.4 → XP_006499791.1  uncharacterized protein C20orf173 homolog isoform X1

    UniProtKB/TrEMBL
    E9Q1X6

RNA

  1. XR_001783013.3 RNA Sequence

  2. XR_866295.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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