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Olfml2b olfactomedin-like 2B [ Mus musculus (house mouse) ]

Gene ID: 320078, updated on 17-Aug-2024

Summary

Official Symbol
Olfml2bprovided by MGI
Official Full Name
olfactomedin-like 2Bprovided by MGI
Primary source
MGI:MGI:2443310
See related
Ensembl:ENSMUSG00000038463 AllianceGenome:MGI:2443310
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110018N05Rik; 4832415H08Rik
Summary
Enables extracellular matrix binding activity and identical protein binding activity. Acts upstream of or within extracellular matrix organization. Located in extracellular matrix. Is expressed in several structures, including alimentary system; embryo mesenchyme; limb; nervous system; and skeleton. Orthologous to human OLFML2B (olfactomedin like 2B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in limb E14.5 (RPKM 18.2), mammary gland adult (RPKM 16.3) and 23 other tissues See more
Orthologs
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Genomic context

See Olfml2b in Genome Data Viewer
Location:
1 H3; 1 76.95 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (170472101..170510356)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (170644431..170682789)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene nitric oxide synthase 1 (neuronal) adaptor protein Neighboring gene predicted gene, 46171 Neighboring gene STARR-seq mESC enhancer starr_02995 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene activating transcription factor 6 Neighboring gene predicted gene, 23523 Neighboring gene predicted gene, 25235

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables extracellular matrix binding IDA
Inferred from Direct Assay
more info
PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within extracellular matrix organization IDA
Inferred from Direct Assay
more info
PubMed 
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in extracellular matrix IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
olfactomedin-like protein 2B
Names
photomedin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001404301.1NP_001391230.1  olfactomedin-like protein 2B isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC125021
  2. NM_001404302.1NP_001391231.1  olfactomedin-like protein 2B isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC125021
  3. NM_001404304.1NP_001391233.1  olfactomedin-like protein 2B isoform 4 precursor

    Status: VALIDATED

    Source sequence(s)
    AC125021
  4. NM_001404305.1NP_001391234.1  olfactomedin-like protein 2B isoform 5 precursor

    Status: VALIDATED

    Source sequence(s)
    AC125021
  5. NM_001404306.1NP_001391235.1  olfactomedin-like protein 2B isoform 6 precursor

    Status: VALIDATED

    Source sequence(s)
    AC125021
    UniProtKB/TrEMBL
    Q8BY24
  6. NM_001404307.1NP_001391236.1  olfactomedin-like protein 2B isoform 7 precursor

    Status: VALIDATED

    Source sequence(s)
    AC125021
    UniProtKB/TrEMBL
    Q8BY24
  7. NM_001404308.1NP_001391237.1  olfactomedin-like protein 2B isoform 8 precursor

    Status: VALIDATED

    Source sequence(s)
    AC125021
    UniProtKB/TrEMBL
    Q8BY24
  8. NM_001404309.1NP_001391238.1  olfactomedin-like protein 2B isoform 9 precursor

    Status: VALIDATED

    Source sequence(s)
    AC125021
    UniProtKB/TrEMBL
    Q8BY24
  9. NM_001404310.1NP_001391239.1  olfactomedin-like protein 2B isoform 10

    Status: VALIDATED

    Source sequence(s)
    AC125021
  10. NM_001404311.1NP_001391240.1  olfactomedin-like protein 2B isoform 11

    Status: VALIDATED

    Source sequence(s)
    AC125021
  11. NM_177068.5NP_796042.3  olfactomedin-like protein 2B isoform 3 precursor

    See identical proteins and their annotated locations for NP_796042.3

    Status: VALIDATED

    Source sequence(s)
    AC125021
    Consensus CDS
    CCDS15473.1
    UniProtKB/Swiss-Prot
    Q3T9I5, Q3V1G4, Q8C106, Q8R3B2
    Related
    ENSMUSP00000047291.9, ENSMUST00000046792.9
    Conserved Domains (2) summary
    pfam02191
    Location:494742
    OLF; Olfactomedin-like domain
    pfam05377
    Location:176202
    FlaC_arch; Flagella accessory protein C (FlaC)

RNA

  1. NR_175831.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125021
  2. NR_175832.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125021

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    170472101..170510356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)