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A630001G21Rik RIKEN cDNA A630001G21 gene [ Mus musculus (house mouse) ]

Gene ID: 319997, updated on 8-Feb-2024

Summary

Official Symbol
A630001G21Rikprovided by MGI
Official Full Name
RIKEN cDNA A630001G21 geneprovided by MGI
Primary source
MGI:MGI:2443131
See related
Ensembl:ENSMUSG00000052760 AllianceGenome:MGI:2443131
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in genitourinary system. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in spleen adult (RPKM 5.4), thymus adult (RPKM 3.2) and 15 other tissues See more
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Genomic context

See A630001G21Rik in Genome Data Viewer
Location:
1 C5; 1 43.75 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85644804..85664377, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (85717083..85736656, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene Sp110 nuclear body protein Neighboring gene Sp140 nuclear body protein Neighboring gene STARR-seq mESC enhancer starr_01550 Neighboring gene STARR-seq mESC enhancer starr_01551 Neighboring gene nuclear antigen Sp100 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:87584047-87584232 Neighboring gene STARR-positive B cell enhancer ABC_E1221 Neighboring gene STARR-positive B cell enhancer ABC_E323 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:87629249-87629446 Neighboring gene STARR-positive B cell enhancer ABC_E1551 Neighboring gene STARR-positive B cell enhancer ABC_E1999 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:87647325-87647478 Neighboring gene STARR-seq mESC enhancer starr_01553 Neighboring gene RIKEN cDNA 9930111H07 gene Neighboring gene microRNA 8096 Neighboring gene calcium binding protein 39

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
uncharacterized protein LOC319997

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177055.3NP_796029.2  uncharacterized protein LOC319997

    See identical proteins and their annotated locations for NP_796029.2

    Status: VALIDATED

    Source sequence(s)
    AA289536, AK041675, BB871611, BG276509
    Consensus CDS
    CCDS48299.1
    UniProtKB/TrEMBL
    Q3UTB2, Q7TSS9
    Related
    ENSMUSP00000070374.8, ENSMUST00000064788.14
    Conserved Domains (1) summary
    pfam03172
    Location:11106
    HSR; HSR domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    85644804..85664377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036165695.1XP_036021588.1  uncharacterized protein LOC319997 isoform X3

  2. XM_011248033.1XP_011246335.1  uncharacterized protein LOC319997 isoform X1

    See identical proteins and their annotated locations for XP_011246335.1

    UniProtKB/TrEMBL
    Q3UTB2, Q7TSS9
    Conserved Domains (1) summary
    pfam03172
    Location:11106
    HSR; HSR domain
  3. XM_017321191.1XP_017176680.1  uncharacterized protein LOC319997 isoform X2

    UniProtKB/TrEMBL
    Q7TSS9
    Conserved Domains (1) summary
    pfam03172
    Location:11106
    HSR; HSR domain
  4. XM_011248032.1XP_011246334.1  uncharacterized protein LOC319997 isoform X1

    See identical proteins and their annotated locations for XP_011246334.1

    UniProtKB/TrEMBL
    Q3UTB2, Q7TSS9
    Conserved Domains (1) summary
    pfam03172
    Location:11106
    HSR; HSR domain