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A630001G21Rik RIKEN cDNA A630001G21 gene [ Mus musculus (house mouse) ]

Gene ID: 319997, updated on 26-Sep-2022

Summary

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Official Symbol
A630001G21Rikprovided by MGI
Official Full Name
RIKEN cDNA A630001G21 geneprovided by MGI
Primary source
MGI:MGI:2443131
See related
Ensembl:ENSMUSG00000052760 AllianceGenome:MGI:2443131
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in genitourinary system. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in spleen adult (RPKM 5.4), thymus adult (RPKM 3.2) and 15 other tissues See more
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Genomic context

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See A630001G21Rik in Genome Data Viewer
Location:
1; 1 C5
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85644804..85664377, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (85717083..85736656, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene Sp110 nuclear body protein Neighboring gene Sp140 nuclear body protein Neighboring gene nuclear antigen Sp100 Neighboring gene microRNA 8096 Neighboring gene RIKEN cDNA 9930111H07 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  2. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC319997

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177055.3 → NP_796029.2  uncharacterized protein LOC319997

    See identical proteins and their annotated locations for NP_796029.2

    Status: VALIDATED

    Source sequence(s)
    AA289536, AK041675, BB871611, BG276509
    Consensus CDS
    CCDS48299.1
    UniProtKB/TrEMBL
    Q3UTB2
    Related
    ENSMUSP00000070374.8, ENSMUST00000064788.14
    Conserved Domains (1) summary
    pfam03172
    Location:11 → 106
    HSR; HSR domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    85644804..85664377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036165695.1 → XP_036021588.1  uncharacterized protein LOC319997 isoform X3

  2. XM_011248033.1 → XP_011246335.1  uncharacterized protein LOC319997 isoform X1

    See identical proteins and their annotated locations for XP_011246335.1

    UniProtKB/TrEMBL
    Q3UTB2
    Conserved Domains (1) summary
    pfam03172
    Location:11 → 106
    HSR; HSR domain

  3. XM_017321191.1 → XP_017176680.1  uncharacterized protein LOC319997 isoform X2

    Conserved Domains (1) summary
    pfam03172
    Location:11 → 106
    HSR; HSR domain

  4. XM_011248032.1 → XP_011246334.1  uncharacterized protein LOC319997 isoform X1

    See identical proteins and their annotated locations for XP_011246334.1

    UniProtKB/TrEMBL
    Q3UTB2
    Conserved Domains (1) summary
    pfam03172
    Location:11 → 106
    HSR; HSR domain
Nucleotide Protein Strain
Heading Accession and Version

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