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Rab9b RAB9B, member RAS oncogene family [ Mus musculus (house mouse) ]

Gene ID: 319642, updated on 26-Sep-2022

Summary

Official Symbol
Rab9bprovided by MGI
Official Full Name
RAB9B, member RAS oncogene familyprovided by MGI
Primary source
MGI:MGI:2442454
See related
Ensembl:ENSMUSG00000043463 AllianceGenome:MGI:2442454
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9330195C02Rik
Summary
Enables identical protein binding activity. Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasmic vesicle and plasma membrane. Predicted to be active in late endosome; lysosome; and phagocytic vesicle. Orthologous to human RAB9B (RAB9B, member RAS oncogene family). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 4.4), cerebellum adult (RPKM 3.3) and 5 other tissues See more
Orthologs
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Genomic context

See Rab9b in Genome Data Viewer
Location:
X; X F1
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (135758896..135769305, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (136858147..136868556, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene cDNA sequence BC065397 Neighboring gene glycine receptor, alpha 4 subunit Neighboring gene predicted gene, 54085 Neighboring gene proteolipid protein (myelin) 1 Neighboring gene predicted gene 15026 Neighboring gene H2B.W histone 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Clone Names

  • MGC130383

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables GDP binding ISO
Inferred from Sequence Orthology
more info
 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
involved_in retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
is_active_in late endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in lysosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in phagocytic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in phagocytic vesicle ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_176971.3NP_795945.1  ras-related protein Rab-9B

    See identical proteins and their annotated locations for NP_795945.1

    Status: VALIDATED

    Source sequence(s)
    AK034442, AW047392, BY122769
    Consensus CDS
    CCDS30425.1
    UniProtKB/Swiss-Prot
    Q8BHH2
    UniProtKB/TrEMBL
    A0A6P5PA73, A0A8C6I7S5, Q3KNA5
    Related
    ENSMUSP00000049739.7, ENSMUST00000058814.7
    Conserved Domains (1) summary
    cd04116
    Location:3172
    Rab9; Rab GTPase family 9 (Rab9)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    135758896..135769305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)