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Ankef1 ankyrin repeat and EF-hand domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 319196, updated on 5-Mar-2024

Summary

Official Symbol
Ankef1provided by MGI
Official Full Name
ankyrin repeat and EF-hand domain containing 1provided by MGI
Primary source
MGI:MGI:2441685
See related
Ensembl:ENSMUSG00000074771 AllianceGenome:MGI:2441685
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ankrd5
Summary
Is expressed in eye and genitourinary system. Orthologous to human ANKEF1 (ankyrin repeat and EF-hand domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 46.7) See more
Orthologs
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Genomic context

See Ankef1 in Genome Data Viewer
Location:
2 F3; 2 67.46 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (136374241..136397774)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (136532321..136555854)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 32546 Neighboring gene predicted gene, 32746 Neighboring gene predicted gene, 32659 Neighboring gene STARR-seq mESC enhancer starr_05800 Neighboring gene STARR-seq mESC enhancer starr_05801 Neighboring gene synaptosomal-associated protein 25 Neighboring gene STARR-seq mESC enhancer starr_05804 Neighboring gene predicted gene, 39943

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: Paral1

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
ankyrin repeat and EF-hand domain-containing protein 1
Names
ankyrin repeat domain 5
ankyrin repeat domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175667.4NP_783598.1  ankyrin repeat and EF-hand domain-containing protein 1

    See identical proteins and their annotated locations for NP_783598.1

    Status: PROVISIONAL

    Source sequence(s)
    BC120825
    Consensus CDS
    CCDS38249.1
    UniProtKB/Swiss-Prot
    Q0VB20, Q9D2J7
    Related
    ENSMUSP00000113881.2, ENSMUST00000121717.2
    Conserved Domains (4) summary
    cd00204
    Location:519643
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:529621
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:527555
    ANK; ANK repeat [structural motif]
    cl08302
    Location:340395
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    136374241..136397774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)