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H3c11 H3 clustered histone 11 [ Mus musculus (house mouse) ]

Gene ID: 319153, updated on 26-Sep-2022


Official Symbol
H3c11provided by MGI
Official Full Name
H3 clustered histone 11provided by MGI
Primary source
See related
Ensembl:ENSMUSG00000101972 AllianceGenome:MGI:2448350
Gene type
protein coding
RefSeq status
Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
H3-H; H3c1; H3c8; H3c10; Hist1h3i
Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H3 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. [provided by RefSeq, Aug 2015]
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Genomic context

See H3c11 in Genome Data Viewer
13; 13 A3.1
Exon count:
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (21967085..21967567, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (21782915..21783397, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene 11274 Neighboring gene H1.5 linker histone, cluster member Neighboring gene H2A clustered histone 22 Neighboring gene H2B clustered histone 22

Genomic regions, transcripts, and products

General gene information



Clone Names

  • MGC144390

Gene Ontology Provided by MGI

Component Evidence Code Pubs
part_of nucleosome ISO
Inferred from Sequence Orthology
more info
located_in nucleus ISO
Inferred from Sequence Orthology
more info
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info

General protein information

Preferred Names
histone H3.1
histone 1, H3i
histone cluster 1, H3i

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178207.2NP_835514.1  histone H3.1

    See identical proteins and their annotated locations for NP_835514.1

    Status: REVIEWED

    Source sequence(s)
    Consensus CDS
    P68433, Q5T009
    A0A6P5QRD5, A0A8C6H6Y4
    ENSMUSP00000139663.2, ENSMUST00000189457.2
    Conserved Domains (1) summary
    PTZ00018; histone H3; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J


  1. NC_000079.7 Reference GRCm39 C57BL/6J

    21967085..21967567 complement
    GenBank, FASTA, Sequence Viewer (Graphics)