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CCDC85C coiled-coil domain containing 85C [ Homo sapiens (human) ]

Gene ID: 317762, updated on 5-Apr-2020

Summary

Official Symbol
CCDC85Cprovided by HGNC
Official Full Name
coiled-coil domain containing 85Cprovided by HGNC
Primary source
HGNC:HGNC:35459
See related
Ensembl:ENSG00000205476
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in esophagus (RPKM 6.4), colon (RPKM 5.4) and 25 other tissues See more
Orthologs

Genomic context

See CCDC85C in Genome Data Viewer
Location:
14q32.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (99500190..99604207, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (99977603..100070727, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 7827 Neighboring gene SET domain containing 3, actin histidine methyltransferase Neighboring gene RNA, U6 small nuclear 91, pseudogene Neighboring gene cyclin K Neighboring gene uncharacterized LOC105370661 Neighboring gene HNF4 motif-containing MPRA enhancer 184 Neighboring gene VISTA enhancer hs1931 Neighboring gene Sharpr-MPRA regulatory region 4550 Neighboring gene HHIP like 1 Neighboring gene cytochrome P450 family 46 subfamily A member 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ22558, MGC117455

Gene Ontology Provided by GOA

Process Evidence Code Pubs
cerebral cortex development ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
adherens junction IEA
Inferred from Electronic Annotation
more info
 
apical junction complex ISS
Inferred from Sequence or Structural Similarity
more info
 
bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 85C

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144995.2NP_001138467.1  coiled-coil domain-containing protein 85C

    See identical proteins and their annotated locations for NP_001138467.1

    Status: VALIDATED

    Source sequence(s)
    AL110504, AL160313
    Consensus CDS
    CCDS45161.1
    UniProtKB/Swiss-Prot
    A6NKD9
    Related
    ENSP00000369592.4, ENST00000380243.9
    Conserved Domains (1) summary
    pfam10226
    Location:12202
    CCDC85; CCDC85 family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    99500190..99604207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011536705.2XP_011535007.1  coiled-coil domain-containing protein 85C isoform X1

    Conserved Domains (1) summary
    pfam10226
    Location:12202
    DUF2216; Uncharacterized conserved proteins (DUF2216)
  2. XM_011536706.2XP_011535008.1  coiled-coil domain-containing protein 85C isoform X2

    Conserved Domains (1) summary
    pfam10226
    Location:12202
    DUF2216; Uncharacterized conserved proteins (DUF2216)
  3. XM_011536707.2XP_011535009.1  coiled-coil domain-containing protein 85C isoform X3

    Conserved Domains (1) summary
    pfam10226
    Location:12202
    DUF2216; Uncharacterized conserved proteins (DUF2216)
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