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Gpc4 glypican 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 317322, updated on 10-Oct-2019

Summary

Official Symbol
Gpc4provided by RGD
Official Full Name
glypican 4provided by RGD
Primary source
RGD:1359399
See related
Ensembl:ENSRNOG00000002413
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 397.2), Adrenal (RPKM 244.8) and 8 other tissues See more
Orthologs

Genomic context

See Gpc4 in Genome Data Viewer
Location:
Xq36
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (139354325..139464876, complement)
106 current Rn_Celera (GCF_000002265.2) X AC_000089.1 (130559646..130670213, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) X NC_005120.3 (139402208..139512761, complement)

Chromosome X - NC_005120.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102550607 Neighboring gene similar to melanoma antigen family A, 5 Neighboring gene high mobility group protein B4-like Neighboring gene ferritin light chain 1-like 1 Neighboring gene similar to 60S ribosomal protein L7

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
cell migration IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of neurotransmitter receptor localization to postsynaptic specialization membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of neurotransmitter receptor localization to postsynaptic specialization membrane IDA
Inferred from Direct Assay
more info
PubMed 
regulation of neurotransmitter receptor localization to postsynaptic specialization membrane IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of presynapse assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of presynapse assembly IDA
Inferred from Direct Assay
more info
PubMed 
regulation of presynapse assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of protein localization to membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 
synaptic membrane adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
synaptic membrane adhesion ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
anchored component of presynaptic membrane IDA
Inferred from Direct Assay
more info
PubMed 
anchored component of presynaptic membrane IMP
Inferred from Mutant Phenotype
more info
PubMed 
cell surface IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cellular_component ND
No biological Data available
more info
 
collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 
external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 
external side of plasma membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
extracellular region IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
glutamatergic synapse IDA
Inferred from Direct Assay
more info
PubMed 
glutamatergic synapse IMP
Inferred from Mutant Phenotype
more info
PubMed 
glutamatergic synapse ISO
Inferred from Sequence Orthology
more info
PubMed 
synapse IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
synapse ISO
Inferred from Sequence Orthology
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014108.1NP_001014130.1  glypican-4 precursor

    See identical proteins and their annotated locations for NP_001014130.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081962
    UniProtKB/TrEMBL
    Q642B0
    Related
    ENSRNOP00000003282.4, ENSRNOT00000003282.5
    Conserved Domains (1) summary
    pfam01153
    Location:24552
    Glypican; Glypican

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005120.4 Reference Rnor_6.0 Primary Assembly

    Range
    139354325..139464876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006257580.3XP_006257642.1  glypican-4 isoform X1

    See identical proteins and their annotated locations for XP_006257642.1

    UniProtKB/TrEMBL
    Q642B0
    Conserved Domains (1) summary
    pfam01153
    Location:24552
    Glypican; Glypican

Alternate Rn_Celera

Genomic

  1. AC_000089.1 Alternate Rn_Celera

    Range
    130559646..130670213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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