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Hsfy2 heat shock transcription factor, Y linked 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 316409, updated on 10-Jul-2024

Summary

Official Symbol
Hsfy2provided by RGD
Official Full Name
heat shock transcription factor, Y linked 2provided by RGD
Primary source
RGD:1311885
See related
EnsemblRapid:ENSRNOG00000038569 AllianceGenome:RGD:1311885
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Hsfy1
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to several human genes including HSFY2 (heat shock transcription factor Y-linked 2). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See Hsfy2 in Genome Data Viewer
Location:
9q31
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (65676744..65678157, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (58182415..58183828, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (63289937..63291350, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene phospholipase C-like 1 Neighboring gene uncharacterized LOC108351933 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene U7 small nuclear RNA Neighboring gene SATB homeobox 2 Neighboring gene uncharacterized LOC102549320

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables sequence-specific double-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
heat shock transcription factor, Y linked 2
Names
heat shock transcription factor, Y-linked 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012132.1NP_001012132.1  heat shock transcription factor, Y linked 2

    See identical proteins and their annotated locations for NP_001012132.1

    Status: PROVISIONAL

    Source sequence(s)
    BC083618
    UniProtKB/TrEMBL
    F7EQV5, Q5XIQ7
    Related
    ENSRNOP00000055621.1, ENSRNOT00000058831.4
    Conserved Domains (1) summary
    pfam00447
    Location:81195
    HSF_DNA-bind; HSF-type DNA-binding

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    65676744..65678157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)