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Kansl3 KAT8 regulatory NSL complex subunit 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 316328, updated on 9-Sep-2018

Summary

Official Symbol
Kansl3provided by RGD
Official Full Name
KAT8 regulatory NSL complex subunit 3provided by RGD
Primary source
RGD:1309220
See related
Ensembl:ENSRNOG00000015417
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309220
Expression
Biased expression in Heart (RPKM 155.5), Testes (RPKM 130.7) and 9 other tissues See more
Orthologs

Genomic context

See Kansl3 in Genome Data Viewer
Location:
9q21
Exon count:
23
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (42899432..42943224, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 9 NC_005108.3 (42553536..42597088, complement)

Chromosome 9 - NC_005108.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102554222 Neighboring gene neuralized E3 ubiquitin protein ligase 3 Neighboring gene AT-rich interaction domain 5A Neighboring gene fer-1-like family member 5 Neighboring gene lectin, mannose-binding 2-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
histone H4-K16 acetylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
histone H4-K16 acetylation IEA
Inferred from Electronic Annotation
more info
 
histone H4-K16 acetylation ISO
Inferred from Sequence Orthology
more info
 
histone H4-K16 acetylation ISS
Inferred from Sequence or Structural Similarity
more info
 
histone H4-K5 acetylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
histone H4-K5 acetylation IEA
Inferred from Electronic Annotation
more info
 
histone H4-K5 acetylation ISO
Inferred from Sequence Orthology
more info
 
histone H4-K5 acetylation ISS
Inferred from Sequence or Structural Similarity
more info
 
histone H4-K8 acetylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
histone H4-K8 acetylation IEA
Inferred from Electronic Annotation
more info
 
histone H4-K8 acetylation ISO
Inferred from Sequence Orthology
more info
 
histone H4-K8 acetylation ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
NSL complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 
histone acetyltransferase complex ISO
Inferred from Sequence Orthology
more info
 
histone acetyltransferase complex ISS
Inferred from Sequence or Structural Similarity
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
nucleolus IEA
Inferred from Electronic Annotation
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
KAT8 regulatory NSL complex subunit 3
Names
NSL complex protein NSL3
non-specific lethal 3 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034835.1NP_001030007.1  KAT8 regulatory NSL complex subunit 3

    See identical proteins and their annotated locations for NP_001030007.1

    Status: PROVISIONAL

    Source sequence(s)
    BC105865
    UniProtKB/Swiss-Prot
    Q3KR73
    Related
    ENSRNOP00000020955.5, ENSRNOT00000020955.5
    Conserved Domains (1) summary
    pfam12695
    Location:342436
    Abhydrolase_5; Alpha/beta hydrolase family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005108.4 Reference Rnor_6.0 Primary Assembly

    Range
    42899432..42943224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006244808.3XP_006244870.1  KAT8 regulatory NSL complex subunit 3 isoform X1

    See identical proteins and their annotated locations for XP_006244870.1

    UniProtKB/TrEMBL
    A0A0G2K522
    Related
    ENSRNOP00000073261.1, ENSRNOT00000085260.1
    Conserved Domains (1) summary
    pfam12695
    Location:342436
    Abhydrolase_5; Alpha/beta hydrolase family
  2. XM_008767027.2XP_008765249.1  KAT8 regulatory NSL complex subunit 3 isoform X1

    See identical proteins and their annotated locations for XP_008765249.1

    UniProtKB/TrEMBL
    A0A0G2K522
    Conserved Domains (1) summary
    pfam12695
    Location:342436
    Abhydrolase_5; Alpha/beta hydrolase family
  3. XM_006244811.1XP_006244873.1  KAT8 regulatory NSL complex subunit 3 isoform X2

    See identical proteins and their annotated locations for XP_006244873.1

    Conserved Domains (1) summary
    pfam12695
    Location:243337
    Abhydrolase_5; Alpha/beta hydrolase family
  4. XM_006244810.3XP_006244872.1  KAT8 regulatory NSL complex subunit 3 isoform X1

    See identical proteins and their annotated locations for XP_006244872.1

    UniProtKB/TrEMBL
    A0A0G2K522
    Conserved Domains (1) summary
    pfam12695
    Location:342436
    Abhydrolase_5; Alpha/beta hydrolase family
  5. XM_006244809.3XP_006244871.1  KAT8 regulatory NSL complex subunit 3 isoform X1

    See identical proteins and their annotated locations for XP_006244871.1

    UniProtKB/TrEMBL
    A0A0G2K522
    Conserved Domains (1) summary
    pfam12695
    Location:342436
    Abhydrolase_5; Alpha/beta hydrolase family
  6. XM_017596442.1XP_017451931.1  KAT8 regulatory NSL complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A0G2K522
    Conserved Domains (1) summary
    pfam12695
    Location:342436
    Abhydrolase_5; Alpha/beta hydrolase family
  7. XM_006244812.2XP_006244874.1  KAT8 regulatory NSL complex subunit 3 isoform X2

    See identical proteins and their annotated locations for XP_006244874.1

    Conserved Domains (1) summary
    pfam12695
    Location:243337
    Abhydrolase_5; Alpha/beta hydrolase family
  8. XM_006244813.2XP_006244875.1  KAT8 regulatory NSL complex subunit 3 isoform X3

    Conserved Domains (1) summary
    pfam12695
    Location:215309
    Abhydrolase_5; Alpha/beta hydrolase family

Alternate Rn_Celera

Genomic

  1. AC_000077.1 Alternate Rn_Celera

    Range
    36330073..36372844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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