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Senp8 SUMO peptidase family member, NEDD8 specific [ Rattus norvegicus (Norway rat) ]

Gene ID: 315723, updated on 2-Oct-2018

Summary

Official Symbol
Senp8provided by RGD
Official Full Name
SUMO peptidase family member, NEDD8 specificprovided by RGD
Primary source
RGD:1309955
See related
Ensembl:ENSRNOG00000011595
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Heart (RPKM 66.3), Muscle (RPKM 63.8) and 9 other tissues See more
Orthologs

Genomic context

See Senp8 in Genome Data Viewer
Location:
8q24
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (64558994..64572850, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 8 NC_005107.3 (64321165..64335616, complement)

Chromosome 8 - NC_005107.4Genomic Context describing neighboring genes Neighboring gene GRAM domain containing 2A Neighboring gene uncharacterized LOC108351716 Neighboring gene 40S ribosomal protein S15a pseudogene Neighboring gene myosin IXA Neighboring gene thymosin beta-10 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

General gene information

Homology

Clone Names

  • MGC109243

Gene Ontology Provided by RGD

Function Evidence Code Pubs
cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
proteolysis IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
sentrin-specific protease 8
Names
NEDD8-specific protease 1
SUMO/sentrin peptidase family member, NEDD8 specific
SUMO/sentrin specific peptidase 8
SUMO/sentrin specific peptidase family member 8
SUMO/sentrin specific protease family member 8
Sumo1/sentrin/SMT3 specific peptidase 8
deneddylase-1
sentrin/SUMO-specific protease SENP8
NP_001012355.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012355.1NP_001012355.1  sentrin-specific protease 8

    See identical proteins and their annotated locations for NP_001012355.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089939
    UniProtKB/Swiss-Prot
    Q5FVJ8
    Related
    ENSRNOP00000062239.1, ENSRNOT00000015415.7
    Conserved Domains (1) summary
    cl23802
    Location:25188
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005107.4 Reference Rnor_6.0 Primary Assembly

    Range
    64558994..64572850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000076.1 Alternate Rn_Celera

    Range
    59578328..59591716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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