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Peak1 pseudopodium-enriched atypical kinase 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 315686, updated on 10-Oct-2019

Summary

Official Symbol
Peak1provided by RGD
Official Full Name
pseudopodium-enriched atypical kinase 1provided by RGD
Primary source
RGD:1312026
See related
Ensembl:ENSRNOG00000042519
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1312026
Expression
Biased expression in Lung (RPKM 118.5), Heart (RPKM 83.3) and 9 other tissues See more
Orthologs

Genomic context

See Peak1 in Genome Data Viewer
Location:
8q24
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (60861742..61080128, complement)
106 current Rn_Celera (GCF_000002265.2) 8 AC_000076.1 (56081503..56289545, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 8 NC_005107.3 (59433992..59650195, complement)

Chromosome 8 - NC_005107.4Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene tetraspanin 3 Neighboring gene high mobility group 20A Neighboring gene leucine rich repeat and Ig domain containing 1 Neighboring gene lethal (2) 06225-like Neighboring gene uncharacterized LOC102553437

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
NOT ATP binding ISO
Inferred from Sequence Orthology
more info
PubMed 
identical protein binding IEA
Inferred from Electronic Annotation
more info
 
identical protein binding ISO
Inferred from Sequence Orthology
more info
PubMed 
non-membrane spanning protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 
non-membrane spanning protein tyrosine kinase activity ISO
Inferred from Sequence Orthology
more info
PubMed 
protein kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cell migration IEA
Inferred from Electronic Annotation
more info
 
cell migration ISO
Inferred from Sequence Orthology
more info
PubMed 
focal adhesion assembly IEA
Inferred from Electronic Annotation
more info
 
focal adhesion assembly ISO
Inferred from Sequence Orthology
more info
PubMed 
peptidyl-tyrosine phosphorylation IEA
Inferred from Electronic Annotation
more info
 
protein autophosphorylation IEA
Inferred from Electronic Annotation
more info
 
protein autophosphorylation ISO
Inferred from Sequence Orthology
more info
PubMed 
protein phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of focal adhesion assembly IEA
Inferred from Electronic Annotation
more info
 
regulation of focal adhesion assembly ISO
Inferred from Sequence Orthology
more info
PubMed 
substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 
substrate adhesion-dependent cell spreading ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
actin cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
actin cytoskeleton ISO
Inferred from Sequence Orthology
more info
PubMed 
focal adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
focal adhesion ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
pseudopodium-enriched atypical kinase 1
NP_001101619.1
XP_006243177.1
XP_006243178.1
XP_017451132.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108149.1NP_001101619.1  pseudopodium-enriched atypical kinase 1

    See identical proteins and their annotated locations for NP_001101619.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473975
    UniProtKB/TrEMBL
    D4A563
    Related
    ENSRNOP00000061695.1, ENSRNOT00000068658.1
    Conserved Domains (1) summary
    cl21453
    Location:14901655
    PKc_like; Protein Kinases, catalytic domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005107.4 Reference Rnor_6.0 Primary Assembly

    Range
    60861742..61080128 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006243115.3XP_006243177.1  pseudopodium-enriched atypical kinase 1 isoform X1

    See identical proteins and their annotated locations for XP_006243177.1

    UniProtKB/TrEMBL
    D4A563
    Conserved Domains (1) summary
    cl21453
    Location:14901655
    PKc_like; Protein Kinases, catalytic domain
  2. XM_017595643.1XP_017451132.1  pseudopodium-enriched atypical kinase 1 isoform X1

    UniProtKB/TrEMBL
    D4A563
    Conserved Domains (1) summary
    cl21453
    Location:14901655
    PKc_like; Protein Kinases, catalytic domain
  3. XM_006243116.3XP_006243178.1  pseudopodium-enriched atypical kinase 1 isoform X1

    See identical proteins and their annotated locations for XP_006243178.1

    UniProtKB/TrEMBL
    D4A563
    Conserved Domains (1) summary
    cl21453
    Location:14901655
    PKc_like; Protein Kinases, catalytic domain

Alternate Rn_Celera

Genomic

  1. AC_000076.1 Alternate Rn_Celera

    Range
    56081503..56289545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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