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Spx Spliceosomal protein on the X [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31558, updated on 28-Aug-2019

Summary

Official Symbol
Spxprovided by FlyBase
Official Full Name
Spliceosomal protein on the Xprovided by FlyBase
Primary source
FLYBASE:FBgn0015818
Locus tag
Dmel_CG3780
Gene type
protein coding
RNA name
spliceosomal protein on the X
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG3780; Dmel\CG3780; SF3B4; spx; SPX

Genomic context

See Spx in Genome Data Viewer
Location:
5E3-5E3; 1-16 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.26 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (6255822..6257596)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (6149855..6151629)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Rabconnectin-3A Neighboring gene schlank Neighboring gene uncharacterized protein Neighboring gene Spt6 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA splicing, via spliceosome IC
Inferred by Curator
more info
PubMed 
mRNA splicing, via spliceosome ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
U2 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
U2 snRNP ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
precatalytic spliceosome HDA PubMed 
ribonucleoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
spliceosomal protein on the X
Names
CG3780-PA
Spx-PA

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    6255822..6257596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_078503.5NP_511058.1  spliceosomal protein on the X [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_511058.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W424
    Related
    FBpp0070859, FBtr0070894
    Conserved Domains (2) summary
    cd12334
    Location:1588
    RRM1_SF3B4; RNA recognition motif 1 in splicing factor 3B subunit 4 (SF3B4) and similar proteins
    cd12335
    Location:99181
    RRM2_SF3B4; RNA recognition motif 2 in splicing factor 3B subunit 4 (SF3B4) and similar proteins
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