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Fam118b family with sequence similarity 118, member B [ Rattus norvegicus (Norway rat) ]

Gene ID: 315549, updated on 13-Aug-2019

Summary

Official Symbol
Fam118bprovided by RGD
Official Full Name
family with sequence similarity 118, member Bprovided by RGD
Primary source
RGD:1307173
See related
Ensembl:ENSRNOG00000011543
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ppp4r1l; RGD1307173
Expression
Biased expression in Thymus (RPKM 118.6), Spleen (RPKM 92.0) and 9 other tissues See more
Orthologs

Genomic context

See Fam118b in Genome Data Viewer
Location:
8q21
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (36416769..36467609, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 8 NC_005107.3 (36435151..36485763, complement)

Chromosome 8 - NC_005107.4Genomic Context describing neighboring genes Neighboring gene FAD-dependent oxidoreductase domain containing 1 Neighboring gene SRP receptor subunit alpha Neighboring gene RNA pseudouridine synthase D4 Neighboring gene uncharacterized LOC102547806

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC116168

Gene Ontology Provided by RGD

Process Evidence Code Pubs
Cajal body organization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Cajal body IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025283.1NP_001020454.1  protein FAM118B

    See identical proteins and their annotated locations for NP_001020454.1

    Status: PROVISIONAL

    Source sequence(s)
    BC098017
    UniProtKB/Swiss-Prot
    Q4QQT2
    Related
    ENSRNOP00000015366.6, ENSRNOT00000015366.7
    Conserved Domains (1) summary
    pfam13289
    Location:158301
    SIR2_2; SIR2-like domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005107.4 Reference Rnor_6.0 Primary Assembly

    Range
    36416769..36467609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008766056.2XP_008764278.1  protein FAM118B isoform X1

    See identical proteins and their annotated locations for XP_008764278.1

    UniProtKB/Swiss-Prot
    Q4QQT2
    Conserved Domains (1) summary
    pfam13289
    Location:158301
    SIR2_2; SIR2-like domain
  2. XM_006242784.3XP_006242846.1  protein FAM118B isoform X1

    See identical proteins and their annotated locations for XP_006242846.1

    UniProtKB/Swiss-Prot
    Q4QQT2
    Related
    ENSRNOP00000073528.1, ENSRNOT00000082346.1
    Conserved Domains (1) summary
    pfam13289
    Location:158301
    SIR2_2; SIR2-like domain

Alternate Rn_Celera

Genomic

  1. AC_000076.1 Alternate Rn_Celera

    Range
    34986274..35007980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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