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CG12730 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31466, updated on 18-Sep-2024

Summary

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Official Symbol
CG12730provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0029771
Locus tag
Dmel_CG12730
See related
AllianceGenome:FB:FBgn0029771
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RE01432; Dmel\CG12730
Summary
Predicted to be integral component of membrane. Is expressed in several structures, including embryonic/larval midgut; embryonic/larval midgut primordium; germ layer; and stage 5 embryo. Orthologous to human CMTM4 (CKLF like MARVEL transmembrane domain containing 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

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See CG12730 in Genome Data Viewer
Location:
5A2-5A2; 1-12 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (5516608..5518771)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (5410641..5412804)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45519 Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR45518 Neighboring gene ncRNA Neighboring gene Visual system homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved role of the Vsx genes supports a monophyletic origin for bilaterian visual systems. Erclik T, et al. Curr Biol, 2008 Sep 9. PMID 18723351
  2. Identification of genes expressed during Drosophila melanogaster gastrulation by using subtractive hybridization. González-Agüero M, et al. Gene, 2005 Jan 31. PMID 15716118
  3. Drosophila glia: Few cell types and many conserved functions. Yildirim K, et al. Glia, 2019 Jan. PMID 30443934
  4. Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster. Combs PA, et al. F1000Res, 2017. PMID 28299188, Free PMC Article
  5. Genome-wide association analysis of oxidative stress resistance in Drosophila melanogaster. Weber AL, et al. PLoS One, 2012. PMID 22496853, Free PMC Article

See all (23) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG12730-PA
CG12730-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    5516608..5518771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001297967.1 → NP_001284896.1  uncharacterized protein Dmel_CG12730, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001284896.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W4B6

  2. NM_132000.3 → NP_572228.1  uncharacterized protein Dmel_CG12730, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572228.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W4B6
    Related
    FBpp0070746
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W4B6 Q9W4B6

Gene LinkOut

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