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Zfp956 zinc finger protein 956 [ Rattus norvegicus (Norway rat) ]

Gene ID: 312301, updated on 25-Jan-2022

Summary

Symbol
Zfp956provided by RGD
Full Name
zinc finger protein 956provided by RGD
Primary source
RGD:1304879
See related
Ensembl:ENSRNOG00000026874 AllianceGenome:RGD:1304879
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Zfp977; RGD1304879
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in Brain (RPKM 42.9), Thymus (RPKM 41.8) and 9 other tissues See more
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Genomic context

See Zfp956 in Genome Data Viewer
Location:
4q24
Exon count:
12
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (76943239..76967238)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (77615146..77635367)

Chromosome 4 - NC_051339.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 282 Neighboring gene Zinc finger protein 212 Neighboring gene ATP synthase subunit delta, mitochondrial pseudogene Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene zinc finger protein 777

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
zinc finger protein 956
Names
protein ZNF783
zinc finger protein 45-like
zinc finger protein 977

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014056.1NP_001014078.1  zinc finger protein 956

    See identical proteins and their annotated locations for NP_001014078.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089951
    UniProtKB/TrEMBL
    Q5FVJ1
    Related
    ENSRNOP00000056030.3, ENSRNOT00000059263.3
    Conserved Domains (3) summary
    COG5048
    Location:259433
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051339.1 Reference mRatBN7.2 Primary Assembly

    Range
    76943239..76967238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039107544.1XP_038963472.1  zinc finger protein 956 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:380445
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:326348
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain
  2. XM_039107536.1XP_038963464.1  zinc finger protein 956 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:380445
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:326348
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain
  3. XM_039107537.1XP_038963465.1  zinc finger protein 956 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:380445
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:326348
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain
  4. XM_039107538.1XP_038963466.1  zinc finger protein 956 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:380445
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:326348
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain
  5. XM_039107545.1XP_038963473.1  zinc finger protein 956 isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:259433
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain
  6. XM_039107540.1XP_038963468.1  zinc finger protein 956 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:380445
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:326348
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain
  7. XM_039107539.1XP_038963467.1  zinc finger protein 956 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:380445
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:326348
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain
  8. XM_039107541.1XP_038963469.1  zinc finger protein 956 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:380445
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:326348
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain
  9. XM_006236417.4XP_006236479.1  zinc finger protein 956 isoform X1

    See identical proteins and their annotated locations for XP_006236479.1

    Related
    ENSRNOP00000080422.1, ENSRNOT00000105916.1
    Conserved Domains (4) summary
    COG5048
    Location:380445
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:326348
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain
  10. XM_039107542.1XP_038963470.1  zinc finger protein 956 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:380445
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:326348
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain
  11. XM_039107543.1XP_038963471.1  zinc finger protein 956 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:380445
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:328348
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:326348
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:397421
    zf-H2C2_2; Zinc-finger double domain
  12. XM_039107546.1XP_038963474.1  zinc finger protein 956 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:163228
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:111131
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:109131
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:180204
    zf-H2C2_2; Zinc-finger double domain
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