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Ubn2 ubinuclein 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 312248, updated on 5-Jan-2022

Summary

Official Symbol
Ubn2provided by RGD
Official Full Name
ubinuclein 2provided by RGD
Primary source
RGD:1310722
See related
Ensembl:ENSRNOG00000005564
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310722
Summary
Predicted to be involved in DNA replication-independent chromatin assembly. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human UBN2 (ubinuclein 2). [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in Adrenal (RPKM 90.8), Thymus (RPKM 78.7) and 9 other tissues See more
Orthologs
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Genomic context

See Ubn2 in Genome Data Viewer
Location:
4q22
Exon count:
19
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (67165278..67251562)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (66164639..66254297)

Chromosome 4 - NC_051339.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing, antiviral 1 Neighboring gene high mobility group protein B1 pseudogene Neighboring gene tetratricopeptide repeat domain 26 Neighboring gene 60S ribosomal protein L23-like Neighboring gene transfer RNA arginine (anticodon CCU)

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in DNA replication-independent chromatin assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134553.1NP_001128025.1  ubinuclein-2

    See identical proteins and their annotated locations for NP_001128025.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473959
    UniProtKB/Swiss-Prot
    D4A666
    Related
    ENSRNOP00000085092.1, ENSRNOT00000096491.1
    Conserved Domains (3) summary
    pfam05722
    Location:10171132
    Ustilago_mating; Ustilago B locus mating-type protein
    pfam08729
    Location:182231
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:442648
    UBN_AB; Ubinuclein conserved middle domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051339.1 Reference mRatBN7.2 Primary Assembly

    Range
    67165278..67251562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006236311.4XP_006236373.1  ubinuclein-2 isoform X4

    Conserved Domains (3) summary
    pfam05722
    Location:10191134
    Ustilago_mating; Ustilago B locus mating-type protein
    pfam08729
    Location:182231
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:442650
    UBN_AB; Ubinuclein conserved middle domain
  2. XM_006236306.4XP_006236368.1  ubinuclein-2 isoform X1

    Related
    ENSRNOP00000061860.2, ENSRNOT00000064175.2
    Conserved Domains (3) summary
    pfam05722
    Location:10191134
    Ustilago_mating; Ustilago B locus mating-type protein
    pfam08729
    Location:182231
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:442650
    UBN_AB; Ubinuclein conserved middle domain
  3. XM_006236307.4XP_006236369.1  ubinuclein-2 isoform X2

    Related
    ENSRNOP00000083893.1, ENSRNOT00000096540.1
    Conserved Domains (3) summary
    pfam05722
    Location:10021117
    Ustilago_mating; Ustilago B locus mating-type protein
    pfam08729
    Location:182231
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:442650
    UBN_AB; Ubinuclein conserved middle domain
  4. XM_006236308.4XP_006236370.1  ubinuclein-2 isoform X3

    Conserved Domains (3) summary
    pfam05722
    Location:10001115
    Ustilago_mating; Ustilago B locus mating-type protein
    pfam08729
    Location:182231
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:442648
    UBN_AB; Ubinuclein conserved middle domain
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