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Map9 microtubule-associated protein 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 310544, updated on 2-Oct-2018

Summary

Official Symbol
Map9provided by RGD
Official Full Name
microtubule-associated protein 9provided by RGD
Primary source
RGD:1560368
See related
Ensembl:ENSRNOG00000012982
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Mtap9; RGD1560368
Expression
Biased expression in Brain (RPKM 149.5), Kidney (RPKM 29.4) and 9 other tissues See more
Orthologs

Genomic context

See Map9 in Genome Data Viewer
Location:
2q34
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (181331426..181367245)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 2 NC_005101.3 (200743299..200779065)

Chromosome 2 - NC_005101.4Genomic Context describing neighboring genes Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial pseudogene Neighboring gene similar to heat shock protein 1, beta Neighboring gene similar to heterogeneous nuclear ribonucleoprotein A3 Neighboring gene neuropeptide Y receptor Y2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
microtubule binding IEA
Inferred from Electronic Annotation
more info
 
microtubule binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
mitotic cytokinesis IEA
Inferred from Electronic Annotation
more info
 
mitotic spindle assembly IEA
Inferred from Electronic Annotation
more info
 
mitotic spindle assembly ISO
Inferred from Sequence Orthology
more info
 
regulation of mitotic centrosome separation IEA
Inferred from Electronic Annotation
more info
 
regulation of mitotic centrosome separation ISO
Inferred from Sequence Orthology
more info
 
regulation of mitotic cytokinesis IEA
Inferred from Electronic Annotation
more info
 
regulation of mitotic cytokinesis ISO
Inferred from Sequence Orthology
more info
 
regulation of mitotic spindle organization IEA
Inferred from Electronic Annotation
more info
 
regulation of mitotic spindle organization ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
aster ISO
Inferred from Sequence Orthology
more info
 
astral microtubule IEA
Inferred from Electronic Annotation
more info
 
astral microtubule ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with astral microtubule ISO
Inferred from Sequence Orthology
more info
 
axon IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
microtubule cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
mitotic spindle ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with mitotic spindle ISO
Inferred from Sequence Orthology
more info
 
mitotic spindle midzone IEA
Inferred from Electronic Annotation
more info
 
mitotic spindle midzone ISO
Inferred from Sequence Orthology
more info
 
spindle midzone ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
microtubule-associated protein 9

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135716.1NP_001129188.1  microtubule-associated protein 9

    See identical proteins and their annotated locations for NP_001129188.1

    Status: PROVISIONAL

    Source sequence(s)
    AABR07012003
    UniProtKB/TrEMBL
    D3ZAG3
    Conserved Domains (1) summary
    pfam07960
    Location:520592
    CBP4; CBP4

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005101.4 Reference Rnor_6.0 Primary Assembly

    Range
    181331426..181367245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006232515.3XP_006232577.1  microtubule-associated protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006232577.1

    UniProtKB/TrEMBL
    D3ZAG3
    Related
    ENSRNOP00000017448.5, ENSRNOT00000017448.6
    Conserved Domains (1) summary
    pfam07960
    Location:520592
    CBP4; CBP4
  2. XM_006232516.3XP_006232578.1  microtubule-associated protein 9 isoform X2

    Conserved Domains (1) summary
    pfam07960
    Location:448520
    CBP4; CBP4

Alternate Rn_Celera

Genomic

  1. AC_000070.1 Alternate Rn_Celera

    Range
    161738899..161770116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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