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CG4293 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31001, updated on 28-Aug-2019

Summary

Official Symbol
CG4293provided by FlyBase
Primary source
FLYBASE:FBgn0024983
Locus tag
Dmel_CG4293
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
154711_at; Dmel\CG4293; EG:65F1.1

Genomic context

See CG4293 in Genome Data Viewer
Location:
1B8-1B9; 1-0 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.26 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (527941..530291, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (421974..424324, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR44892 Neighboring gene silver Neighboring gene embryonic lethal abnormal vision Neighboring gene arginase Neighboring gene beta amyloid protein precursor-like Neighboring gene mir-4960 stem loop Neighboring gene uncharacterized protein Neighboring gene ventral nervous system defective

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the CG4293 gene: The CG4293 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, chicken, zebrafish, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, and frog.
  • Orthologs

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
ER to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ER to Golgi vesicle-mediated transport ISS
Inferred from Sequence or Structural Similarity
more info
 
retrograde vesicle-mediated transport, Golgi to ER IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
COPII-coated ER to Golgi transport vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
COPII-coated ER to Golgi transport vesicle ISS
Inferred from Sequence or Structural Similarity
more info
 
endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein
Names
CG4293-PA
CG4293-PB
CG4293-PC
CG4293-PD
CG4293-PE

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    527941..530291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001038727.1NP_001033816.1  uncharacterized protein Dmel_CG4293, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001033816.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O76896
    Related
    FBpp0099909, FBtr0100476
    Conserved Domains (2) summary
    pfam07970
    Location:200349
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:19104
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
  2. NM_001038728.3NP_001033817.1  uncharacterized protein Dmel_CG4293, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001033817.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O76896
    Related
    FBpp0099908, FBtr0100475
    Conserved Domains (2) summary
    pfam07970
    Location:200349
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:19104
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
  3. NM_001272170.1NP_001259099.1  uncharacterized protein Dmel_CG4293, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259099.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PGB8
    Related
    FBpp0306149, FBtr0334033
    Conserved Domains (2) summary
    pfam07970
    Location:200347
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:19104
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
  4. NM_130491.5NP_569847.1  uncharacterized protein Dmel_CG4293, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_569847.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O76896
    Related
    FBpp0070084, FBtr0070089
    Conserved Domains (2) summary
    pfam07970
    Location:200349
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:19104
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
  5. NM_166847.4NP_726677.1  uncharacterized protein Dmel_CG4293, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_726677.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O76896
    Related
    FBpp0070085, FBtr0070090
    Conserved Domains (2) summary
    pfam07970
    Location:200349
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:19104
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
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