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B4galnt4 beta-1,4-N-acetyl-galactosaminyl transferase 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 309105, updated on 5-Jul-2025
Official Symbol
B4galnt4provided by RGD
Official Full Name
beta-1,4-N-acetyl-galactosaminyl transferase 4provided by RGD
Primary source
RGD:1310052
See related
Ensembl:ENSRNOG00000053075 AllianceGenome:RGD:1310052
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310052
Summary
Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be located in Golgi cisterna membrane. Orthologous to human B4GALNT4 (beta-1,4-N-acetyl-galactosaminyltransferase 4). [provided by Alliance of Genome Resources, Jul 2025]
Expression
Biased expression in Brain (RPKM 68.9), Thymus (RPKM 11.3) and 3 other tissues See more
Orthologs
human mouse all
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See B4galnt4 in Genome Data Viewer
Location:
1q41
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (205600989..205611889)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (196171394..196182294)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (213870328..213881233)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097361 Neighboring gene small EDRK-rich factor 2 pseudogene Neighboring gene plakophilin 3 Neighboring gene single Ig and TIR domain containing Neighboring gene anoctamin 9 Neighboring gene RNA, U6 small nuclear 1205

Go to nucleotide: Graphics FASTA GenBank

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Related articles in PubMed

  1. Molecular cloning and characterization of beta1,4-N-acetylgalactosaminyltransferases IV synthesizing N,N'-diacetyllactosediamine. Gotoh M, et al. FEBS Lett, 2004 Mar 26. PMID 15044014
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables N-acetyl-beta-glucosaminyl-derivative 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables acetylgalactosaminyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables acetylgalactosaminyltransferase activity ISO
Inferred from Sequence Orthology
more info
  
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1
Names
beta 1,4-N-acetylgalactosaminyltransferase-transferase 4
NP_001101032.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107562.1 → NP_001101032.1  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for NP_001101032.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473953
    UniProtKB/TrEMBL
    A6HXN0, A6HXN1, D4A750
    Related
    ENSRNOP00000069694.1, ENSRNOT00000086483.3
    Conserved Domains (3) summary
    COG0463
    Location:821 → 1021
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cl08459
    Location:143 → 264
    PA14; PA14 domain
    cl11394
    Location:714 → 1014
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    205600989..205611889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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