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Ciapin1 cytokine induced apoptosis inhibitor 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 307649, updated on 12-Aug-2018

Summary

Official Symbol
Ciapin1provided by RGD
Official Full Name
cytokine induced apoptosis inhibitor 1provided by RGD
Primary source
RGD:1549737
See related
Ensembl:ENSRNOG00000016234
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Adrenal (RPKM 112.2), Heart (RPKM 108.2) and 9 other tissues See more
Orthologs

Genomic context

See Ciapin1 in Genome Data Viewer
Location:
19p13
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (10596923..10612414)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 19 NC_005118.3 (10591726..10607111)

Chromosome 19 - NC_005118.4Genomic Context describing neighboring genes Neighboring gene RNA polymerase II subunit C Neighboring gene coenzyme Q9 Neighboring gene C-C motif chemokine ligand 17 Neighboring gene similar to Aldose reductase (AR) (Aldehyde reductase)

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC94686

Gene Ontology Provided by RGD

Function Evidence Code Pubs
2 iron, 2 sulfur cluster binding ISO
Inferred from Sequence Orthology
more info
 
2 iron, 2 sulfur cluster binding ISS
Inferred from Sequence or Structural Similarity
more info
 
4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
electron transfer activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
electron transport chain IEA
Inferred from Electronic Annotation
more info
 
hemopoiesis IEA
Inferred from Electronic Annotation
more info
 
hemopoiesis ISO
Inferred from Sequence Orthology
more info
 
iron-sulfur cluster assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 
negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 
nucleolus IEA
Inferred from Electronic Annotation
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
anamorsin
Names
fe-S cluster assembly protein DRE2 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007689.1NP_001007690.1  anamorsin

    See identical proteins and their annotated locations for NP_001007690.1

    Status: PROVISIONAL

    Source sequence(s)
    BC083753
    UniProtKB/Swiss-Prot
    Q5XID1
    Related
    ENSRNOP00000021769.3, ENSRNOT00000021769.5
    Conserved Domains (2) summary
    pfam05093
    Location:233301
    CIAPIN1; Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
    cl17173
    Location:395
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005118.4 Reference Rnor_6.0 Primary Assembly

    Range
    10596923..10612414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006255107.3XP_006255169.1  anamorsin isoform X1

    See identical proteins and their annotated locations for XP_006255169.1

    UniProtKB/Swiss-Prot
    Q5XID1
    Conserved Domains (2) summary
    pfam05093
    Location:233301
    CIAPIN1; Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
    cl17173
    Location:395
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  2. XM_006255108.3XP_006255170.1  anamorsin isoform X1

    See identical proteins and their annotated locations for XP_006255170.1

    UniProtKB/Swiss-Prot
    Q5XID1
    Conserved Domains (2) summary
    pfam05093
    Location:233301
    CIAPIN1; Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
    cl17173
    Location:395
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  3. XM_006255106.3XP_006255168.1  anamorsin isoform X1

    See identical proteins and their annotated locations for XP_006255168.1

    UniProtKB/Swiss-Prot
    Q5XID1
    Conserved Domains (2) summary
    pfam05093
    Location:233301
    CIAPIN1; Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
    cl17173
    Location:395
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

Alternate Rn_Celera

Genomic

  1. AC_000087.1 Alternate Rn_Celera

    Range
    10066716..10079509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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