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cntn2 contactin 2 [ Danio rerio (zebrafish) ]

Gene ID: 30726, updated on 1-Aug-2018

Summary

Official Symbol
cntn2provided by ZNC
Official Full Name
contactin 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-990630-12
See related
Ensembl:ENSDARG00000000472 Vega:OTTDARG00000042389
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
tag1; si:dz37k09.2
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See cntn2 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
21
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (23933017..23988258)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (23695160..23750401)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta Neighboring gene neurofascin homolog (chicken) a Neighboring gene chitinase, acidic.1 Neighboring gene chitinase, acidic.2

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Cell adhesion molecules (CAMs), organism-specific biosystem (from KEGG)
    Cell adhesion molecules (CAMs), organism-specific biosystemCell adhesion molecules are (glyco)proteins expressed on the cell surface and play a critical role in a wide array of biologic processes that include hemostasis, the immune response, inflammation, em...
  • Cell adhesion molecules (CAMs), conserved biosystem (from KEGG)
    Cell adhesion molecules (CAMs), conserved biosystemCell adhesion molecules are (glyco)proteins expressed on the cell surface and play a critical role in a wide array of biologic processes that include hemostasis, the immune response, inflammation, em...

General gene information

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
axon extension involved in regeneration IMP
Inferred from Mutant Phenotype
more info
PubMed 
axonogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
central nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
neuron migration IGI
Inferred from Genetic Interaction
more info
PubMed 
neuron migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
neuron projection development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of axon extension IMP
Inferred from Mutant Phenotype
more info
PubMed 

General protein information

Preferred Names
contactin-2
Names
transiently expressed axonal glycoprotein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131446.1NP_571521.1  contactin-2 precursor

    See identical proteins and their annotated locations for NP_571521.1

    Status: PROVISIONAL

    Source sequence(s)
    AF064799
    UniProtKB/TrEMBL
    Q9W675
    Related
    ENSDARP00000000486.8, OTTDARP00000047364, ENSDART00000000486.9, OTTDART00000061188
    Conserved Domains (7) summary
    cd04969
    Location:434506
    Ig5_Contactin_like; Fifth Ig domain of contactin
    cd05850
    Location:33126
    Ig1_Contactin-2; First Ig domain of contactin-2
    cd05854
    Location:525606
    Ig6_Contactin-2; Sixth Ig domain of contactin-2
    smart00410
    Location:429506
    IG_like; Immunoglobulin like
    cd00063
    Location:615702
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:511605
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:329413
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    23933017..23988258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394819.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    249365..295962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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