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etv4 ETS variant transcription factor 4 [ Danio rerio (zebrafish) ]

Gene ID: 30700, updated on 15-Aug-2021

Summary

Official Symbol
etv4provided by ZNC
Official Full Name
ETS variant transcription factor 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-990415-71
See related
Ensembl:ENSDARG00000018303
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
pe; pea3
Orthologs
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Genomic context

See etv4 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (27536099..27568694)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (27444729..27477334)
103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (29107272..29139721)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene sclerostin Neighboring gene mesenchyme homeobox 1 Neighboring gene DEAH (Asp-Glu-Ala-His) box polypeptide 8 Neighboring gene spermatogenesis associated 20

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ETS translocation variant 4
Names
ETS domain-containing transcription factor PEA3
etID309954.12
ets variant 4
ets variant gene 4
polyomavirus enhancer activator 3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131425.2NP_571500.2  ETS translocation variant 4

    Status: VALIDATED

    Source sequence(s)
    AL833789, CT698283, EH579782, EH597159
    Related
    ENSDARP00000016969.8, ENSDART00000013033.10
    Conserved Domains (2) summary
    smart00413
    Location:349433
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:5348
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    27536099..27568694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009306586.3XP_009304861.1  ETS translocation variant 4 isoform X1

    Conserved Domains (2) summary
    smart00413
    Location:350434
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:5349
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394847.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    467077..499544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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