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Susd3 sushi domain containing 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 306810, updated on 24-Jul-2025
Official Symbol
Susd3provided by RGD
Official Full Name
sushi domain containing 3provided by RGD
Primary source
RGD:1310933
See related
Ensembl:ENSRNOG00000016525 AllianceGenome:RGD:1310933
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be active in plasma membrane. Orthologous to human SUSD3 (sushi domain containing 3). [provided by Alliance of Genome Resources, Apr 2025]
Expression
Biased expression in Kidney (RPKM 116.8), Testes (RPKM 49.0) and 5 other tissues See more
Orthologs
human mouse all
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See Susd3 in Genome Data Viewer
Location:
17p14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (15607259..15623322)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (15400845..15417851)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (15814132..15830328)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S12 like 8 Neighboring gene BICD cargo adaptor 2 Neighboring gene FYVE, RhoGEF and PH domain containing 3 Neighboring gene uncharacterized LOC134482823 Neighboring gene caspase recruitment domain family, member 19 Neighboring gene ninjurin 1

Go to nucleotide: Graphics FASTA GenBank

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Related articles in PubMed

  1. Estrogen-dependent sushi domain containing 3 regulates cytoskeleton organization and migration in breast cancer cells. Moy I, et al. Oncogene, 2015 Jan 15. PMID 24413080, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  
Preferred Names
sushi domain-containing protein 3

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107341.2 → NP_001100811.1  sushi domain-containing protein 3

    See identical proteins and their annotated locations for NP_001100811.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000017
    UniProtKB/TrEMBL
    A6J6X1, D3Z8I2
    Related
    ENSRNOP00000031097.4, ENSRNOT00000032997.6
    Conserved Domains (1) summary
    cd00033
    Location:33 → 93
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    15607259..15623322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006253709.5 → XP_006253771.1  sushi domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZSB4, A6J6X3
    Related
    ENSRNOP00000081141.1, ENSRNOT00000105376.2
    Conserved Domains (1) summary
    cd00033
    Location:8 → 68
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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