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Cxcl14 C-X-C motif chemokine ligand 14 [ Rattus norvegicus (Norway rat) ]

Gene ID: 306748, updated on 10-Oct-2019

Summary

Official Symbol
Cxcl14provided by RGD
Official Full Name
C-X-C motif chemokine ligand 14provided by RGD
Primary source
RGD:1307406
See related
Ensembl:ENSRNOG00000011984
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
BRAK
Expression
Biased expression in Muscle (RPKM 102.7), Adrenal (RPKM 101.4) and 8 other tissues See more
Orthologs

Genomic context

See Cxcl14 in Genome Data Viewer
Location:
17p14
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (9109731..9117754)
106 current Rn_Celera (GCF_000002265.2) 17 AC_000085.1 (8404203..8412194)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 17 NC_005116.3 (11271210..11279233)

Chromosome 17 - NC_005116.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103690142 Neighboring gene uncharacterized LOC108348502 Neighboring gene hypothetical LOC100365564 Neighboring gene uncharacterized LOC108348501

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC124510

Gene Ontology Provided by RGD

Function Evidence Code Pubs
chemokine activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
antimicrobial humoral immune response mediated by antimicrobial peptide ISO
Inferred from Sequence Orthology
more info
PubMed 
cell chemotaxis IEA
Inferred from Electronic Annotation
more info
 
immune response IEA
Inferred from Electronic Annotation
more info
 
inner ear development IEA
Inferred from Electronic Annotation
more info
 
inner ear development ISO
Inferred from Sequence Orthology
more info
PubMed 
killing of cells of other organism ISO
Inferred from Sequence Orthology
more info
PubMed 
negative regulation of myoblast differentiation IEA
Inferred from Electronic Annotation
more info
 
negative regulation of myoblast differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of natural killer cell chemotaxis IEA
Inferred from Electronic Annotation
more info
 
positive regulation of natural killer cell chemotaxis ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
C-X-C motif chemokine 14
Names
chemokine (C-X-C motif) ligand 14

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013137.2NP_001013155.1  C-X-C motif chemokine 14 precursor

    See identical proteins and their annotated locations for NP_001013155.1

    Status: PROVISIONAL

    Source sequence(s)
    BC101896
    UniProtKB/TrEMBL
    Q8K453
    Related
    ENSRNOP00000016009.5, ENSRNOT00000016009.5
    Conserved Domains (1) summary
    cl00134
    Location:2485
    Chemokine; small cytokines, including a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; distinguished from other cytokines by their receptors, which are G-protein coupled receptors; divided into 4 ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005116.4 Reference Rnor_6.0 Primary Assembly

    Range
    9109731..9117754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000085.1 Alternate Rn_Celera

    Range
    8404203..8412194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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