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tefa TEF transcription factor, PAR bZIP family member a [ Danio rerio (zebrafish) ]

Gene ID: 30674, updated on 3-Oct-2019

Summary

Official Symbol
tefaprovided by ZNC
Official Full Name
TEF transcription factor, PAR bZIP family member aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-990415-264
See related
Ensembl:ENSDARG00000039117
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
tef; tefb; tefbeta; zTEF[a]; wu:fa12f02; wu:fb11h02

Genomic context

See tefa in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (19144833..19153222, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (19022959..19031359, complement)
103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (20241115..20249517, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene aconitase 2, mitochondrial Neighboring gene PHD finger protein 5A Neighboring gene zinc finger CCCH-type containing 7Bb Neighboring gene chibby homolog 1 (Drosophila)

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cellular response to light stimulus IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription, DNA-templated IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
thyrotrophic embryonic factor
Names
thyrotroph embryonic factor a
thyrotroph embryonic factor beta
thyrotrophic embryonic factor a

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131400.1NP_571475.1  thyrotrophic embryonic factor

    See identical proteins and their annotated locations for NP_571475.1

    Status: PROVISIONAL

    Source sequence(s)
    U43671
    UniProtKB/TrEMBL
    Q9W722
    Related
    ENSDARP00000057123.3, ENSDART00000057124.5
    Conserved Domains (1) summary
    cd14695
    Location:229288
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    19144833..19153222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005156136.3XP_005156193.1  thyrotrophic embryonic factor isoform X2

    See identical proteins and their annotated locations for XP_005156193.1

    UniProtKB/TrEMBL
    O57673
    Related
    ENSDARP00000057124.4, ENSDART00000057125.5
    Conserved Domains (1) summary
    cd14695
    Location:216275
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
  2. XM_005156135.3XP_005156192.1  thyrotrophic embryonic factor isoform X1

    Conserved Domains (1) summary
    cd14695
    Location:229288
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395301.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    368932..375637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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